Vibrio alginolyticus: N646_0041
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Entry
N646_0041 CDS
T02840
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vag
Vibrio alginolyticus
Pathway
vag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N646_0041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vag03400
]
N646_0041
Enzymes [BR:
vag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N646_0041
DNA repair and recombination proteins [BR:
vag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N646_0041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Helicase_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGV15874
UniProt:
A0A2I3BY59
LinkDB
All DBs
Position
1:complement(46082..49543)
Genome browser
AA seq
1153 aa
AA seq
DB search
MTKATILSVTNPSERGDKKQLGNLPGAALPLAIAELAKQHSSHSLLVVPDPQIALKLQAE
IEQFTDQTVSLFPDWETLPYDNFSPHQEIISERIARLYQLPSQRDGITIVPVSTVLQRQS
PRDFLLQHTLMVKTGDRISLEKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSND
PYRIDFFDDEIDTIRTFDPENQRSIDDIQQIQLLPAHEFPTTKEAIEDFRTRWRTQFDAR
REPESIYMQVTKGTWPAGIEYWQPLFFDHTETLFEYLPEDSQVITYGDIESAVDTFLTDV
EYRYDQKKVDPLRPLLTPEQLWLKKDELFSQLKQLPITQLSLDKVVKRAGRQNLPVQSLA
ELGVQQQNKEPLSRLRQFSEQFSGKIVFSVESEGRREALTELLQGIKVRPVVHGSLYQAL
DSGDRFSLILGAAEHGFIHEELSFALICESDLLGDRVIQRRRKDKKAVNSDTVIRHLAEL
KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEYQNDAKLYVPVSSLNLISRYSGGAE
ESAPLHKLGGEAWAKARRKAAEKVRDVAAELLDVYAKRELKPGFKFELDRGQYATFKATF
PFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSD
IKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQKEEPVVREAVLREIMRGGQVYFLHNQVETIEKTAEDLQKLIPEAR
ITVAHGQMRERELERIMNDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVQALKEGKEPSLDELLREQTEVEMRIPALLPDDYI
PDVNTRLSMYKRIASVTSSDELSELKVELIDRFGLLPDATKNLLAVSELKISAGSLKAKK
IEAHDKGGFIEFYPDADINPAYLVKLLQSQPQKFAMEGPTKFKFSVPLVDRRKRIQFVQD
LLNDFKQNLLPTS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagcaacgattctttccgtcaccaacccttcagagcgtggcgacaaaaaacag
ctaggtaatttgccgggcgcagctctacctctagccattgcagagctagccaagcagcat
tcgagtcactcgctactcgttgtgcctgacccgcaaattgctttaaagcttcaggcagag
attgagcaattcaccgaccaaacggtaagcctgttccccgactgggaaacgctgccttac
gataacttttctccgcatcaagaaatcatctctgaacgtatcgcacgcctataccaactg
ccaagtcaacgtgatggcataaccatcgtcccggtcagtacagtattgcaacgccaatcg
ccacgtgattttttgttgcaacacactttaatggtgaaaactggtgatcgaatctcgcta
gagaagttacgtgtacaacttgaaaattcaggctaccgccatgtagatcaagtatttggg
ccaggtgaatatgcaagtcgtgggtctattctggatctctttcctatgggcagcaatgac
ccgtaccgcatcgacttctttgatgatgaaatagataccattcgcacatttgatccagag
aaccaacgctctatcgacgatattcagcaaatccaattgctgcctgcacatgagttccca
accactaaagaagcgattgaagatttccgtacacgttggcgcacccagttcgacgcacgc
cgcgagcctgaatcaatctacatgcaagtgaccaaaggcacgtggcccgctggtattgag
tattggcagccgctgttttttgaccataccgagactttatttgaatatttgccagaagac
tctcaagtcatcacatatggtgatatcgaatctgcggtcgatactttcttaaccgatgtc
gaatatcgatacgaccagaaaaaagttgatccgttgcgccctcttttgactcctgaacag
ctttggttgaaaaaagacgaacttttcagtcaactaaaacagctccctatcactcaattg
agcctagataaagtggttaagcgtgccggtcgtcaaaacctacccgtacaatcgttagcc
gagcttggcgttcagcaacaaaataaagagccgctctcgcgccttcgtcagttcagtgag
caattcagcggaaaaatcgttttctcggtagagtcagaaggtcgtcgtgaagcactaacg
gagctgttgcaaggcatcaaagttcggccggtcgtacatggctcactttaccaagctcta
gactcgggtgatcgattcagcttgatcttaggcgcagcagagcatggtttcattcacgaa
gagctgagcttcgctctgatctgtgaaagtgatctactcggtgaccgtgttatccagcga
cgccgcaaagataaaaaagccgtcaacagtgacaccgttattcgccatcttgcggaacta
aaacccggtcaacctgtggttcatattgatcacggtattggccgctacatcggtttacaa
acacttgaagccggtggcatgaaaacggaatacgtcacccttgagtatcaaaacgatgcc
aagctctacgtgccagtttcatcactgaatcttatcagccgttattctggcggcgctgaa
gagagtgcgccactgcataaattaggtggtgaagcgtgggcaaaagcacgtcgtaaagcg
gcagaaaaagtgcgtgatgtcgcagcagaattgctggatgtgtatgctaaacgagaatta
aaacctggcttcaaatttgagctagatcgtgggcaatacgcaacatttaaagcaacattc
ccgtttgaagaaacagatgaccaagcgatggccatcaatgccgtattgtcagacatgtgc
caggcaaaagcgatggatcgcttagtgtgtggtgacgtgggctttggtaaaacggaagtc
gctatgcgcgcagcatttgtcgcaacggataacagtaaacaggtcgccgtactcgtacca
acaaccttgcttgctcagcagcatttcgaaaacttccgtgaccgttttgccaacttacca
atccgagttgaagtactgtctcgttttaaatctgccaaagaacaaaaagtcattctgcaa
gacgttgccgatggtaaagtcgatattgtcgttggtacgcataagctgctttcgagcgac
attaaattcaaagatttaggtttgttgatcgttgatgaggaacaccgctttggggttcgt
caaaaagaaaaagtcaaagcaatgcgtgcggatgtggacattcttaccctcaccgcaaca
ccaattccacgcacactgaatatggcaatgagtggcatgcgagacctgtcgatcatcgcg
acacctcctgcacgccgtttagccattaaaacctttgttcgacaaaaagaagagccagtg
gtccgtgaagcggtactgcgtgaaattatgcgtggtggtcaggtttacttcctgcacaat
caggttgaaaccattgaaaaaacggcagaagacttacagaaactcattccagaggcacgc
attaccgtggctcatggtcaaatgcgcgagcgcgaacttgagcgaatcatgaatgacttc
taccatcagcgctttaatgtgttggtgtgtacaaccatcatcgaaaccggtatcgacgta
ccaacggcaaataccataatcatggatcgtgcggacaatcttggcttggcgcagttgcat
caattacgtggccgtgttggacgttcacaccatcaggcctatgcttacttattaacgcca
catccaaaagccatgaccaaagatgccatcaagcgtcttgatgcgattgcttcactggaa
gacttaggtgctggctttacgttagcaacccacgatttagaaatccgtggtgctggtgag
ctgcttggtgatgagcaaagtgggcaaattcaatccgttggttttacactttatatggaa
atgctggaacaagcagtgcaagcattaaaagaaggcaaggagccatctttggatgagctg
cttcgtgagcaaactgaagtggaaatgcgaatcccagcgctcttaccagatgattacatt
ccggatgtaaacacacgactgtcgatgtacaaacgcattgcgagtgtcacaagcagtgat
gaactatcagagctaaaagtggagctgattgatcgctttggtttgcttccagacgcaaca
aagaacttacttgccgtctcagaattgaaaatttcggccggtagtttaaaagcgaaaaag
atagaagcccatgataaaggtggatttatcgagttttaccctgatgctgacataaatcca
gcgtatttagttaaactgctgcaatcacagccgcaaaaatttgcaatggaaggtccaact
aagttcaagtttagcgtaccattggtggaccgacgtaaacgcattcagtttgttcaagac
ttactgaatgattttaaacagaatttattaccaacgagctaa
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