Vibrio alginolyticus: N646_3812
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Entry
N646_3812 CDS
T02840
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vag
Vibrio alginolyticus
Pathway
vag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N646_3812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vag03019
]
N646_3812
Enzymes [BR:
vag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N646_3812
Messenger RNA biogenesis [BR:
vag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N646_3812
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AGV19621
UniProt:
A0A2I3CNW4
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All DBs
Position
2:complement(778478..780046)
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AA seq
522 aa
AA seq
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MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL
ERLSNGPHVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMQRL
RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ
NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKD
GDWKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVAT
DIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFAIER
LIKEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPNAASENAPAAEKKAGN
GANKPKRRFNGGNNGNKNSTNQGGAGKPKGNREGQGRANSKPDDRKPNGNKPNGNKPNGN
KPNGNKSGNAGKPSGNRKPNNAKPAGNKPSGQRRKPRPQAAN
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctcgttaggtctatctgctccaatccttaaagctattcaagagaaaggc
tacgacaccccttcgccaattcaggcaaaagcaattcctgctattttggaagggaaagac
gtaatggcagcagcgcagactggtacaggtaaaactgcaggctttacgctaccgattctt
gagcgtttatcgaacggccctcacgttcgtgctaaccaagttcgtgcacttatcctgacg
ccaacacgtgagcttgcagctcaggtgcaagaaaacgtgtttatgtacggccgtcatctt
ccactaagcagtgcggttgtttttggtggtgtgaagatcaacccgcaaatgcagcgtctt
cgcaaaggtgcggatgtgttggtcgcgacaccaggccgcctgatggatttgtacaaccaa
aatgcagtgaagttcgaccaactggaagtgctagtactggacgaagcagaccgcatgcta
gatatgggctttatccgtgacattcgtaagatcctagctctgctaccaaaacagcgtcag
aacctacttttctctgcaactttctcggatgaaatccgcgaccttgcgaaaggcttggtg
aacaacccggttgagatttccgttaacccggcaaactcgacggcgagaacggttgagcaa
agcatctacccagcagacgtgaagaagaaagcaccgatgttggttaaattgatcaaagac
ggcgattggaagcaagtgctggtgtttacgaaaacgaaacacggcgcaaaccgtctggcg
aagttcctgatcgaacaaaatctaccggctgctgccatccacggcaacaagagccaaggc
gcgcgtaccaaagcactggcggattttaaatcgggtgaaattcgtgtgttggtcgcgacg
gacattgctgcacgcggtatcgatattcctcaattgccgcaagtggtgaactttgagcta
cctaaagtggcggaagactacgttcaccgtattggtcgtactggccgtgctggcgaagta
ggtaaagcgatttcactggtttgtgcgctggaagcgtctgagctgtttgcgattgaacgt
ttgattaaagaagtgctaccacgtaaagagttggaaggttttgcgccaaccaatgtggtg
ccagaatctaaactggatactcgcccaatcaaaccgaaaaaacctaagaagccaaaaaaa
ccaaaagcgccaaatgctgcaagtgaaaacgccccagcagccgaaaagaaagcaggcaat
ggtgcaaacaaacctaaacgtcgcttcaacggtggtaacaacggcaacaaaaacagcacc
aaccaaggcggtgcgggcaagcctaaaggcaaccgtgaaggccaaggtcgtgcaaacagc
aaaccagatgaccgcaaacctaacggcaacaagccaaatggcaataaaccgaatggaaat
aaaccaaacggtaataagagtggcaacgctggtaaaccgtcaggtaaccgcaagccaaac
aatgctaaacctgcaggaaacaaaccgtcaggtcagcgccgtaaacctcgtccgcaggcg
gcaaactaa
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