Verticillium alfalfae: VDBG_00564 Help Entry VDBG_00564        CDS       T02227                                  Name (RefSeq) DEAD/DEAH box helicase   KO K20103   ATP-dependent RNA helicase DDX60 [EC:5.6.2.7] Organism val  Verticillium alfalfae Brite KEGG Orthology (KO) [BR:val00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:val03019]     VDBG_00564 Enzymes [BR:val01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.7  DEAD-box RNA helicase      VDBG_00564 Messenger RNA biogenesis [BR:val03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Exosome cofactors      VDBG_00564 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DEAD ResIII Helicase_C Motif Other DBs NCBI-GeneID:  9529237 NCBI-ProteinID:  XP_003008882 UniProt:  C9S6E4 LinkDB All DBs AA seq 1801 aa AA seqDB search MAEEDERDTSSGEEYTDSSDEETASTSSGEHTDPETLRLWYTNLLPRTVDIVGDFAGREL FVIHGEGLLRHCITEAKVDFQDGMQLLHAVYAVEKFLDELRQRGCNFDILFFNAHANAVL PESVAAENASMATAKFALARTVLIEHLKRHARNAGNVSDRRTNVTVFDDFDSEDFRRYRA ENAVHFFLCNEGTSYGENDESVGAGRTVVLRHFIYRLVSEGYHVAVINDVQFMSSKIFTT LISGSNTRLAVLDLPEGVSQSAENAALISLIDQIKTPLVEKNIAGESADRLTVRELVVIA TLKQILQSGNYGSEAAALLLHTALLGASSLSERLCGNASKAVAGTQASFLDKFFRTARDI IKGLSQDASLDNLTWDIYDLVDGNILATLLQDEDASDSISLRVLTRANLLRKALAEATDE SKVSSIPQYDEDEDDEEGAKESATQHRNTSVLPFSHPVFDKHLDSVQVRPDARSSKSTTA ASIFEELSNWNKDKKPVDPRKPPPKLGFWAKKRHQKLMADIVTYSASLTNATGRIIDPEV VVSGTGNQAKVAKQVEKAKKVGGGKAKALAAAKALQASKHEKKGNTAIEHWKSTIAELDE EKNLVKRYGKALRYIHNRPSEALAVVGPEGYLYMCNVLVLMWKKRCETTKRKLKGIDIVA LLWDRLLYIARSPNATPEVLKAVDLIKTCVNLPFPELVKNETASRDLSFKLSIKASNKDL AIPLNLTEFQLEHSGPYMERNFDSKPDDRVTFDPDAWQRKVLDTIDANNSLMVVAPTSAG KTFISFYAMKKILQANDDDVLVYVAPTKALVNQIAAEVAARYSKSYTREGKSVWAIHTRD YRVNNPTGCQVLVTVPHVLQTMLLAPSNSDRPSAWARRVKRIIFDEVHCIGQAEDGIVWE QLLLLAPCPIIALSATVGNAGEFHDWLAVSQAQKGYKMELVVHNARYSDLRKFVYCPPKQ LKMDVLAKQDQLPIPGIDQGEERNPRFFFTHPIAALLDINRGSLDDVSLEPRDCWTLWKC MDKHQTTDFPVAKSLDPGSTLPKIISKADILSWEAGLKKVLQQWMVVPESPFSAVRTELL GSAFVELQKDFVSQGKRLKERTTIIPLLYDLNENDSLPAIAFNYDRAQCEEALKTVLAHL SAKETAWKESSKEWKQKLADYEEWKKAGLKAAKAKPKKDRPAAGNKDDRQGGSRDDNKNS KMQTAQANASIEVSPWESFDPEDPLEQFSFGDRTRLSRTEFAEMTDDLSSDKVDQWLVQS LKRGLGVHHAGMNRRYRQVVEILFRKGYLGVVMATGTLALGVNMPCKTVIFNGDSVDLTA LNYRQAAGRAGRRGFDLLGNVVFADIAPNRAFEIMSLRLPDLRGHFPVSTTLILRLFGLL NGTKNSDFATAAVNSLLSQSRLYLGGPEGGLAIKHHMRFSIEYLRRQHLLSEKGAPINYS SLVSHLYFTENAAFGFHALLKGGYFHRICGRINENPAAVLNQLVLVMSHLFGRQVIRTND REYMEVIVRNSQSVIFLPRLPKAAERILVSHNRDTLNLFKGYVTSYASQHLSDVPDNVLP FTKTTVGAHEPTKGQAPFDRTPSPSIRSTFAALSGHTDESLSSVHDLCSTVRAGVFLEEA TIPHVPVYPIDSDERLNAYIYDFFKHGDLVALTRDNRIKGGDVWFFLKDFSVVLATIVTS LTNYMRADADAEELGELDEGVAEDEVNFMPSQQTQRPAKASVAEAAAAPVTQTLPIRKKK KVADNWDDDDDEEAAQASGSSGDEETDSDGDMEDEENLPTVLKAFTQLKEEFDDKFFKIG A NT seq 5406 nt NT seq  +upstreamnt  +downstreamnt atggctgaagaggacgagcgtgacacctcgtcaggtgaagagtatactgattcgagcgat gaagagaccgcgtccaccagttctggcgagcacacggaccccgagaccttgcgcctctgg tacacaaatctccttcctcgaacagtcgacattgtcggcgatttcgctggcagggagctt ttcgtcattcatggcgagggcctgctgaggcactgcatcaccgaagccaaagttgacttc caagatggtatgcagctccttcacgccgtctacgctgtggagaaattcctcgacgagctg aggcagagaggttgcaacttcgacatcctcttcttcaatgcccatgcaaatgcggtactt cctgagtcagtcgcggctgagaacgcctcaatggcgacggctaagttcgcactggcgaga accgttctgatcgagcacctgaaacggcacgcgaggaacgcagggaacgtctctgatcgt cgaaccaacgtcacagtctttgacgactttgactctgaggacttccgtcgctaccgtgct gagaatgctgtgcatttcttcctctgtaacgagggcacgtcctatggcgagaacgacgag agtgtaggtgccggaaggaccgtcgttctgaggcatttcatctacaggctcgtatccgag gggtatcatgtggccgtcatcaatgacgtccagttcatgagctccaagattttcacaacc ctcatttcgggatcaaacacaagacttgctgttctcgacctgcccgaaggcgtttctcaa tccgctgaaaacgcggctttgatctctctgatcgaccagatcaaaacgcctctcgtcgag aaaaacatcgctggcgaatcagcagatagactcaccgtgcgcgagctagtagttattgct accctcaaacagatcttgcagtctggcaactatggatccgaggctgccgcgctcctactc cacaccgccttactcggtgcgtccagtctgtccgaaaggctttgcggcaacgcctcaaag gcagtggccggaacccaagcatctttcttggacaaattctttaggacggctcgcgatatt attaagggtctgtcccaagatgcatcgcttgacaacctgacctgggatatttacgattta gttgatggtaatatcttggctacccttctacaggacgaggatgccagtgactctatttct ttgagagtcctaacccgtgcgaatcttctgaggaaagcacttgccgaggctaccgatgag tccaaagtctcgtccattccccaatatgacgaagatgaggatgacgaggagggggcaaag gagtcggcaacccagcaccgcaacacatctgtccttcctttctctcatccagtctttgac aaacacctcgactccgtccaggtccgacctgacgcacgatcctccaagtcgacgacggca gccagcatcttcgaagagctgagtaactggaacaaagacaaaaagcctgtcgatcctcgc aagcctcccccgaagctcggtttctgggcgaaaaagcgtcatcagaagcttatggcggac atcgtcacatattccgcttcactcaccaacgcaaccggcagaatcatagaccctgaagtt gtcgtctccggtaccggcaaccaagcaaaggttgctaagcaagtcgagaaggcgaagaaa gtcggcgggggtaaggcgaaagcgcttgcagcggcgaaggccctccaggcgtcgaagcat gagaagaagggaaacacggccatcgaacactggaagtcaaccattgccgagctagacgag gagaagaatctcgtcaagcggtatggtaaggcgttgaggtatatccacaatcgaccctca gaggcgttggctgttgttggcccggagggttacctttacatgtgcaatgtacttgttctc atgtggaagaagcgatgcgagaccaccaagaggaaactcaagggaattgacattgtggct ctcctctgggacaggctgctctatatcgcgcggtctcccaacgcaacccctgaggttctc aaagccgttgatctgatcaagacctgcgtgaaccttccattccccgaattggtgaagaac gagaccgcctcgcgcgatctgagcttcaaactttctatcaaggcgtccaacaaggacctc gccatacctctgaatctgaccgagtttcagcttgagcactcaggaccttacatggaacgc aattttgactcgaagcccgatgacagagtaacattcgatcccgatgcctggcagagaaag gttctcgatactatcgatgccaataacagtctgatggtagtcgcgcccacttctgccggt aagactttcatctcattctacgcgatgaagaagatcctccaggccaatgatgacgatgtc cttgtctatgtcgcccccaccaaagcattggtcaaccagatcgcagctgaagtcgctgcg aggtattcaaagtcatacactagagaaggcaagtctgtatgggctattcatactcgcgac taccgagtgaacaatccgactgggtgccaagtcctcgttactgtacctcatgtactgcag accatgttgcttgccccaagcaattccgaccgtcccagcgcctgggcgcgccgcgtcaag agaatcatcttcgacgaagtacactgtatcggccaagccgaagacggcattgtctgggaa caactcctgctacttgcgccttgccccatcatcgcgctgtccgccacggttggcaacgca ggcgagttccacgactggctcgctgtgtcgcaggcccaaaagggctacaaaatggaactg gtcgtccacaatgctcgatactccgacttgagaaagttcgtttactgcccgccgaagcag ctaaagatggatgtcttggcgaaacaggatcagttaccaattccaggcatcgatcaaggg gaggagaggaacccacgattcttcttcacccaccccattgctgcgttgctcgatatcaat cgtggcagcttggacgatgtcagcctggagcctcgcgattgttggactttgtggaagtgt atggacaagcaccagactaccgacttcccggtcgcgaagtctttggaccctggcagtacg ttgccaaaaatcatcagcaaggctgatatcctcagttgggaggctgggctgaagaaggtc ctccagcaatggatggtagtccctgaatcgccattcagtgcagtaagaaccgaactcttg ggatctgcttttgtcgaactacaaaaggatttcgtctcccagggaaaacgtctcaaagaa cgcacgacaatcatcccgctgttgtatgatcttaacgagaacgacagtctgcccgccata gcattcaattacgaccgcgcacaatgcgaggaagctctcaagactgtcctggcacacctc tcagctaaggagacggcttggaaggagtcgagcaaagagtggaagcagaagcttgcggac tatgaggagtggaagaaagccgggctcaaggcggcaaaggccaagcccaaaaaggacaga cctgcagccggcaacaaggacgacaggcagggcggctctcgcgacgacaacaagaactca aagatgcagacagcccaagccaacgctagcattgaggtcagcccttgggagagtttcgat cccgaggaccctctcgagcagtttagcttcggcgatcgcacgagactatcgcgaaccgag tttgctgagatgacagatgacctgagcagcgacaaagttgatcaatggctagtccagtct ctcaagaggggtctcggcgtgcatcacgctggtatgaatcgaaggtaccgtcaggtggtc gaaattttgttccgcaagggctacctgggagtcgtcatggccactggcaccctcgcgctc ggtgtcaacatgccttgcaagactgtcatcttcaacggcgactccgttgacctaacagcg ctgaactatcgtcaggctgccggtcgtgccggtcgaagaggcttcgacttgctcggcaat gtcgtctttgccgacattgctcccaaccgcgccttcgagatcatgtcacttcgacttcct gatcttcgcggtcacttccctgtctctacgactcttatccttcgtctctttggtctcctg aatggaaccaagaattccgacttcgctactgctgccgtcaactcactgctttcgcaatca cgcctgtaccttggtggtcccgaaggcgggttggccataaagcatcacatgcgtttctcc atcgagtacctgcgtcgacagcacctgctctcagagaagggcgctcctatcaactattca agtcttgtgagccatctttacttcaccgagaatgctgcgtttgggttccatgctctgctc aaaggaggttacttccaccgcatctgtggccgtatcaacgagaaccccgctgccgtgctc aaccagcttgtactcgtcatgtcacacctgtttggccgccaagtcatcaggaccaatgac cgagagtacatggaagttatcgtgcgcaactcgcagtccgtgattttcctcccacgtctg cccaaggcggctgagcgcattttagtgtcgcacaaccgcgacacactcaacttgttcaag ggttacgtcacatcctacgcctcgcagcacctgtcagacgtccccgacaacgttcttccc tttactaagaccaccgtcggcgcccacgagcctaccaaaggacaggctcccttcgaccgt acacccagcccctcgatccgttccactttcgccgcgctctctggtcatacagatgagagt ctcagctcggtacacgatctgtgttccacagtccgtgcaggcgtcttcctcgaggaggcg acgatcccacacgttcctgtgtatccgatcgattccgatgagcgcctcaacgcgtacatc tatgacttcttcaagcatggcgaccttgtcgcgctgacccgcgacaaccgcatcaagggc ggcgatgtttggttcttccttaaggacttctctgtcgtccttgcaaccatcgtgacgagc ctgacgaactacatgcgcgccgatgcggatgccgaggaacttggcgagctggacgagggc gttgcggaggacgaggtcaacttcatgccatcgcagcagacgcagcgccctgccaaggcg tctgtcgcggaggctgccgctgcgcctgtcacgcagactctgcctattcgcaagaagaag aaggtcgccgataactgggatgacgatgacgacgaagaggctgcgcaggcgtcgggctca tcaggcgacgaagagactgatagcgatggcgacatggaggacgaagaaaacctgcccacc gtgctcaaggcattcacccagctcaaggaggagtttgatgacaagttcttcaagatcgga gcttaa

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