Verticillium alfalfae: VDBG_00662 Help Entry VDBG_00662        CDS       T02227                                  Name (RefSeq) ATP-dependent helicase NAM7   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism val  Verticillium alfalfae Pathway val03013   Nucleocytoplasmic transport val03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:val00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     VDBG_00662    03015 mRNA surveillance pathway     VDBG_00662  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:val03019]     VDBG_00662 Enzymes [BR:val01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      VDBG_00662     5.6.2.5  RNA 5'-3' helicase      VDBG_00662 Messenger RNA biogenesis [BR:val03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      VDBG_00662    mRNA cycle factors     Common to processing body (P body) and stress granule      VDBG_00662 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  AAA_12 AAA_11 UPF1_Zn_bind UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD PIF1 SLFN-g3_helicase UvrD-helicase Helicase_RecD AAA_16 nSTAND3 ATPase AAA_22 SRP54 PhoH AAA_25 Motif Other DBs NCBI-GeneID:  9530550 NCBI-ProteinID:  XP_003008980 UniProt:  C9S6R3 LinkDB All DBs AA seq 1041 aa AA seqDB search MEGAFTHLGNHLISDSAAAIKAGADDLSTIDADESLLYGGKFGGRGGRRRADDDDNQTEL YDEEDNDSLTSAPVGALQDLKLGHAQEEERELPAHACSYCGIHSPSSVVKCLGCNKWFCS ARGNTTSSHIVNHLVRARHREVQLHPESTLGDTILECYNCGSKNVFLLGFIPAKADTVVR AFLPWLVATPSDAEQLRARHLTPNVMAKLEELWKEDMTATVADLDKATSIDDDPHPVLLK YEDPFQYQNVFGPLVKMESDYDKKLKEAQSEDGLQIRWDYGLNGKHLASFELHKIESGDV KLAVGDEMRLRYKGELRPAWEGVGYVIKIPNNHSDEVTLELRKAGNEKTVPTECTHNFSA DYVWKATSYDRMQLAMKTFAVDDNSVSGFIVHKLLGRDVAVAPMKTAMPKKFTAPGLPDL NQSQISAIKAVLQTPLSLIQGPPGTGKTVTSATIIYHLAKSSGGQVLVCAPSNVAVDQLC ERIHRTGLKVVRLTAKSREDVESSVSFLALHEQVRMNDSNGELVKLAQLKTELGELSSQD EKKFKQLTKAAERDILHNADVVCCTCVGAGDPRLSKIKFRNVLIDESTQSAEPECMIPLV LGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVNLRLQPIRLNTQYRMHPCLSEF PSNMFYDGSLQNGVTHAQRLRRDVDFPWPVADTPMMFWSNLGNEEISASGTSYLNRTEAS NVEKVVTRFFKAGVKPQDIGVITPYEGQRSYIVSTMQNTGTFKKESYKEVEVASVDAFQG REKDFIVLSCVRSSDNQGIGFLSDPRRLNVGLTRAKYGLVILGNPKVLSKHELWHHLLVH FKDRKCLVEGPLTNLQSSLLQFGKPKTPYRQKFNQPNQYAAGGYGSGNGNSNAAATVLLA VLSATSIQARCIYIPTTSPLSTALASAAPVSTRPILSSSPDSATKPGPDCQVPLLVDLAI AGPLVAQRASLARVWPILSTPMQALVSLGPRDRSDRLTQYVNSTSGNRNGPGNGYGRRFD KDDDEKSVSTAFHSQIGGGFD NT seq 3126 nt NT seq  +upstreamnt  +downstreamnt atggagggagcctttactcacctcggaaaccacttgatctccgattccgctgctgcgatc aaggccggcgccgacgacctctcgactatcgatgcggacgagagcctcctttatggtggc aagtttgggggccgcggcggacgacgccgcgccgatgacgacgacaaccagactgagctg tatgacgaggaggacaatgacagtctgacgagcgcacccgttggcgctttgcaagacctg aaactcggtcacgctcaagaggaggagagagagctgcctgcgcatgcctgctcgtactgc ggcatccattccccgagctccgttgtcaagtgccttggctgcaacaaatggttctgcagt gctcgcggcaacacgacctccagccacattgtcaaccatctcgttcgcgctcgccaccga gaagtccagcttcaccctgaatcgacccttggcgacactatccttgagtgctacaactgc ggaagcaaaaacgtcttcctgctgggattcatccctgctaaagccgataccgtcgtccgc gccttcctcccgtggctggtcgcaacgccctcagacgccgagcagctgcgcgcccgtcac ttgaccccgaatgttatggctaagctcgaggaactgtggaaagaggatatgacggcaacg gtggccgatttggacaaggcgaccagtattgatgacgatcctcatcctgtgctgctcaag tacgaagacccgttccagtaccagaatgtttttggccctctggtcaagatggagtccgac tacgacaagaagctcaaggaagcgcaatcggaggacggccttcagattcgctgggattac ggcctgaacggcaagcatcttgcaagcttcgagcttcacaagatagagtccggcgatgtg aagctggctgttggtgacgagatgcgactccgctacaagggagagcttcgtccagcctgg gaaggcgttggctacgtgatcaagattcccaacaatcactctgacgaggtcactctggag ctgcgtaaggccggtaacgagaagacggtcccaaccgagtgcacccacaacttttcggcc gattatgtgtggaaggcgacttcatatgaccgcatgcagctcgccatgaagactttcgct gttgatgacaacagtgtctcgggtttcatcgttcacaagctgcttggacgtgacgttgcg gtcgcgcctatgaagacggccatgcctaagaagtttaccgctcctggactacccgacctc aaccagtcccagatttctgccatcaaggcggtccttcaaacgcctctgagtctcatccag gggcccccgggcactggcaagaccgtcacgtcggcgacaatcatctaccatctcgctaag agcagcggaggacaggtcctcgtctgtgcgccttctaacgttgccgtcgatcaactttgc gaacgtatccaccgcacagggctcaaggtcgtgcgcttgacagccaagtcccgcgaggat gttgagtcctctgtcagtttcctcgctctccacgaacaagtccgtatgaacgacagcaat ggcgagcttgtcaaacttgcacagctgaagaccgagctcggcgaactctccagccaggat gagaagaaattcaagcagctgaccaaggctgccgagcgtgatattttacacaacgctgac gtcgtctgctgcacctgtgttggagcaggcgatccccgtctctctaagatcaagttccgt aatgttttgatcgatgagtcgacccagtctgctgagccggaatgtatgattcctcttgtt ctcggttgcaagcaggtggttcttgttggcgatcacaagcagctgggcccagtcatcatg aacaagaaggcagcgaaggcaggccttaaccagtctctattcgaacgactggtgaatctg cgcctgcagcctattcggctgaacacccagtaccgcatgcacccctgcctgtcggaattc ccatccaacatgttttacgatggctcccttcaaaacggcgtgacgcacgcccagcgactc cgccgcgacgtcgacttcccatggcccgttgccgatacacccatgatgttctggtcgaac ctaggcaacgaggagatctcagcctccggcacatcttatctcaaccgcaccgaggcttcg aacgtcgagaaggttgtgactcggttcttcaaggcaggcgttaagccccaggacatcggt gttatcaccccgtacgaaggccagcgcagctacatcgttagcacgatgcagaacacgggc actttcaagaaggaaagctacaaggaggtcgaggtggcgtcggtcgacgctttccagggc agagagaaggacttcatcgtgctctcttgcgtgcgttccagcgacaaccaaggcatcggt ttcctttcggacccccgtcgcctgaacgttggtctcacgcgtgcgaagtacggccttgtc atcctcggtaaccccaaggtgctgtctaagcacgagctttggcaccatctccttgtccac tttaaggaccgcaagtgtctcgtcgagggcccgcttaccaacctgcaaagctccctcctc cagtttggcaaacccaagacgccgtaccgtcaaaagttcaaccagcctaaccaatacgct gccggcggatacggcagcggcaatgggaacagtaatgcagccgctacggtcctcctggca gttctgtccgcgacttcgatacaggctcgttgtatctacattccgacgacgtctcctcta tccacagctctagcctcggcggcgccggtctcaacacgacctatcctcagttcttctccg gattcggccacgaaacctggcccggactgccaggtgcccctactggtcgatctggcaatc gcagggccgctcgtggcgcagagagcatcgctggcgagagtgtggccaattctgagtaca ccgatgcaagcgctagtgtcattggggccaagggaccgcagcgaccgtctcacgcaatat gtcaactcgaccagcgggaaccgaaatggccctggcaatggctacggacgtcgcttcgac aaggatgacgatgaaaagagcgtcagcactgccttccacagtcagattggcggcggcttc gactga

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