Verticillium alfalfae: VDBG_07127
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Entry
VDBG_07127 CDS
T02227
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
val
Verticillium alfalfae
Pathway
val03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
VDBG_07127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
val03021
]
VDBG_07127
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_07127
Transcription machinery [BR:
val03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
VDBG_07127
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
VDBG_07127
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
VHS
HEPN_AbiV
UBZ_FAAP20
zf-RRN7
Motif
Other DBs
NCBI-GeneID:
9527553
NCBI-ProteinID:
XP_003002556
UniProt:
C9SQ92
LinkDB
All DBs
AA seq
672 aa
AA seq
DB search
MSHNEQSGADVAEDYKQALEDLNSTNRADISTLTTIARENTEHAQIITDILQRHIMKAPA
HKKLPAIYVLDSIVKNVGTPYTLFFGAQLFQTFMEAYAAVDGHVRRKMEETLQTWKQPVP
QSLDDRPVFPPEVTKPIEESLNKARNSALALQAQGRGHPVGRARGAGIHRATPTPPGMRP
GSSQPGYPGPPPHAQQQQLNGSRPPSVQQQQAPAPYPAYGGLQPTAAVPTPFQASPSQHH
SVNIAVLKHDIQELITASTLEAAQYPHDGVIKARLQGLHDLQRLLQTQDMPQDHLILIKN
QVADLALKVRPQSVPSSAPIAAATPVSYHPPPPAPVAHIAPQPASVTLDSLLGQGALASL
LARQSATPQAQTPAPAPPPYAGMPIRSPQPPVAEPQRQSSAAPTPDPMALLRRSAHGRPP
GRQAYNYTAGTDTNTNLPHPGLSLASLGGVPSSTPTRRGTAARGRYHTSKHREFRAHLLP
SLFDALGPQCTQCGRRFTKDEDGRKKKTAHMDWHFQVHHRLAEAERRGQHRSWYVDHSDW
VASREVVDADHAKEAAEAAARQDSGAHGSGGADGKGSSQVPYIAVPDASAGVNTTCPICQ
EEFENKWLDTAQEWVWLDAKLVGNRAYHASCHAEATMVRDATPARGTPEPVLGKRKAEDE
LKNARRLKMESA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacaacgaacagtcgggcgccgacgtggcagaggactacaagcaggctttggag
gatctgaactcaaccaacagggccgacatcagcacgttgacgactattgcacgagagaat
accgagcacgcccaaatcatcacagatattcttcagaggcatatcatgaaagcaccggcg
cacaagaagctgcctgctatatatgttctcgactcgatcgtaaaaaacgtcggcacaccc
tacactctattttttggagctcagcttttccagacctttatggaggcctatgctgccgtg
gacggccatgtccgtcgcaagatggaggagacgctgcagacgtggaagcaacctgtgcct
cagtcgctcgacgacaggcctgtgttcccgccagaagtcacgaagccgattgaggaatcg
ttgaacaaagcgcggaattcagctttggctctccaggcgcaaggtcgtggacaccccgtg
ggtagagcccgtggcgcaggaattcatagggcaacgccgacaccacccgggatgaggcca
ggatcgagccaacctggatatcctggcccgccacctcatgcacagcagcaacagctcaac
ggtagccggccacctagcgttcaacaacagcaggcaccggcaccctatcccgcatatggc
ggcctccagcctactgctgctgtccctacaccgtttcaggcgtcgccgtcgcagcatcat
tccgtgaacattgccgtgttgaaacatgacatccaggagctcatcaccgcctccacgttg
gaagcggcgcagtatccgcacgatggggttattaaggcgaggctgcaggggttgcatgat
ttacaaaggttgcttcaaacccaggacatgccgcaggatcatttgatcctcattaaaaat
caagtagccgatctcgctttaaaagtgaggccacagtcggtcccaagctctgcccctatt
gctgctgctacgcccgtatcatatcacccaccgccgcctgcacccgtggcgcatatagcg
ccgcagccagcttcagtcacacttgattctctgcttggccagggcgcgctggcgagtctt
ttggctcggcagtctgcgacgccgcaggcgcaaacgccggcgccagctccgccgccttac
gccggcatgccgattcgatcgcctcagccgcccgtggccgagccgcaacgacagtctagc
gcggcaccgaccccggatccgatggcgttgctccgccggtctgcgcatggccggcctcct
gggcggcaagcctacaactacaccgccggtaccgacaccaataccaacctgccccaccct
gggctgtctctggcatcgctcggaggtgtcccctcctccacccccacccggaggggtacc
gccgccaggggcaggtatcatacctccaaacatcgcgagtttcgcgctcatctacttccg
tccctttttgatgctctcggcccgcagtgcacgcagtgcggtcgacggttcacgaaggac
gaggacgggcgcaagaagaagacggcgcacatggactggcactttcaggtccaccaccgc
ctagcggaagcagagcgccgcgggcagcatcgcagttggtacgtagaccactcggactgg
gtggcttcgcgcgaggttgtggacgccgaccatgccaaggaggcagccgaggcggcggca
cgacaagacagcggggcccacggtagcggcggtgccgacgggaagggctcgtcgcaggtt
ccgtacattgcggtgcctgatgcctcggcgggagtcaacacgacgtgcccgatctgccag
gaggaattcgagaataagtggctcgacacggcgcaggagtgggtttggctggatgccaag
ctcgtggggaacagggcttatcatgcgagctgccatgctgaagcgacaatggtgcgggac
gccacgccggcgagggggacgccggagcctgtcttagggaagcgcaaggcggaggacgaa
ctaaagaatgcgaggcggctcaagatggaatctgcatga
DBGET
integrated database retrieval system
