Variovorax sp. PMC12: C4F17_03510
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Entry
C4F17_03510 CDS
T05380
Symbol
dnaX
Name
(GenBank) DNA polymerase III, subunit gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03030
DNA replication
vam03430
Mismatch repair
vam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C4F17_03510 (dnaX)
03430 Mismatch repair
C4F17_03510 (dnaX)
03440 Homologous recombination
C4F17_03510 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vam03032
]
C4F17_03510 (dnaX)
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_03510 (dnaX)
Enzymes [BR:
vam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C4F17_03510 (dnaX)
DNA replication proteins [BR:
vam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C4F17_03510 (dnaX)
DNA repair and recombination proteins [BR:
vam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C4F17_03510 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNA_pol3_tau_5
AAA
RuvB_N
AAA_22
AAA_18
AAA_30
AAA_14
AAA_19
Rad17
AAA_5
AAA_16
nSTAND3
AAA_assoc_2
SKI
AAA_2
TsaE
AAA_28
Herpes_Helicase
Torsin
Adeno_E1B_55K_N
Motif
Other DBs
NCBI-ProteinID:
AVQ80092
UniProt:
A0A2P1V4I1
LinkDB
All DBs
Position
1:770078..771934
Genome browser
AA seq
618 aa
AA seq
DB search
MSYLVLARKFRPKTFGEMVGQGHVVQALENALTTQRLHHAYLFTGTRGVGKTTVSRILAK
SLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQSLLEQAVYKP
VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNL
RPMAPETVLEHLTSVLQTENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGNGELVEA
GVRQMLGSVDRGHVFRLIEALAQGDGKTVVETSEALRVDGMSAASTLEEMTAVLQAMAVL
QAVPSRAESADAATDPDAADTARLAALMPADETQLLYSLCLHGRGELGLAPDEYAALTMV
LLRLLAFKPSNAAASTASTEKKTLNEAAAAAPQAPARAPAPAPVPAPVVRPPAEQPAAVA
PAPAPTSPTAPAGQRLAVVDEPRRQPEQRPEPPETPAKVVGVPIRVQPPPSARDVPPAEG
SQRVPYTPIPQSEDGDFWHATVTQLVASEAINALTRELALQSQLVGRDTDQWMLRIERET
LNQPSSREKLTAALNGLGHDVKLTIEIGAVVDSPARRNRQAADERQRVAEEAIYNDPEVQ
ALMRDFDAKIVPGTLKPA
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatctcgtgctcgctcgcaagttccgcccgaaaaccttcggtgagatggtcggc
caggggcatgtggtgcaggcgctcgagaacgcgttgacgacgcagcgcctgcatcacgcc
tatcttttcaccggcacccggggggtcggcaagaccacggtctcgcggatcctggcgaag
tcgctcaactgccaggggccggacgggcagggcggcatcacggccacgccgtgcggtgtc
tgccaggcttgccgcgacatcgattccggccgtttcgtcgactacaccgagctcgacgcg
gcctcgaaccgcggtgtcgacgaggtgcagtcgctgctcgagcaagccgtgtacaagccg
gtgcaggggcgcttcaaggtcttcatgatcgacgaagtgcacatgctcaccaacaccgcg
ttcaacgcgatgctgaagacgctcgaggagccgcccgagtacctcaagttcgtgctggcc
acgaccgatccgcagaaagtgccggtcacggtgctgtcgcgctgcctgcagttcaacctg
cggccgatggcgcccgagacggtgctcgaacacctcacgagcgtgctgcagaccgaaaac
gttccggccgagccgcaggcgctgcgcctgctggcgcgcgcggcgcgcggctcgatgcgc
gacgcgctgtcgctcaccgaccaggccatcgcattcggcaacggcgagcttgtcgaggcc
ggcgtgcggcagatgctcggcagcgtcgatcgcggccatgtgttccgcctgatcgaggcc
ctggcacagggcgacggcaagacggtggtcgagacgtccgaagcgctgcgcgtcgacggc
atgtcggccgcgtccacgctggaagaaatgacggccgtcctgcaggccatggccgtattg
caggccgtgccctcgcgcgccgagtcggccgatgccgccaccgaccccgatgccgccgac
accgcgcgcctcgccgcgctgatgcctgccgacgagacgcaactgctctacagcctctgc
ctgcacggccgtggcgagctgggcctggcgcccgacgagtacgcggcgctgaccatggtg
ctgttgcggctcctggccttcaagccttccaacgcggctgcttcgacagcctccacggaa
aaaaaaactctgaatgaagccgcggctgccgcgccgcaggcgccggcacgtgccccggca
cccgctccagtccctgcgccggtcgtgcgtccgccggccgaacagccggctgccgtagcc
cccgcgccggccccgacatcgccaacggcaccggctgggcagcgccttgccgtggtcgac
gaaccccgccgccagcccgagcagcgccccgagccgcccgaaacgcccgccaaggtcgtc
ggcgtgcccatccgtgtgcagcctccgcccagcgcgcgcgatgttccccccgccgaaggc
tcgcagcgcgttccctacacgcccattccccagagcgaagacggcgatttctggcacgcc
acggtcacgcaactggttgcctccgaagccatcaacgccctcacgcgcgaactggcgctg
cagtcgcagctggtgggccgcgacaccgaccagtggatgctgcgcatcgagcgcgagacg
ctcaaccagccctccagccgcgaaaagctgacggccgcgctcaacggcctcggccacgac
gtcaagctcacgatcgagatcggcgccgtggtcgacagcccggcccgccgcaacaggcag
gccgccgacgagcgccagcgcgtggccgaggaagccatctacaacgaccccgaagtgcag
gcgctgatgcgcgacttcgatgcgaagatcgtcccaggaaccctgaaaccggcctga
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