Variovorax sp. PMC12: C4F17_06725
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Entry
C4F17_06725 CDS
T05380
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C4F17_06725 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_06725 (mfd)
Enzymes [BR:
vam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4F17_06725 (mfd)
DNA repair and recombination proteins [BR:
vam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C4F17_06725 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
IstB_IS21
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AVQ80666
UniProt:
A0A2P1V660
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All DBs
Position
1:1454262..1457744
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AA seq
1160 aa
AA seq
DB search
MDLPHLTAGKRFTLPRPPLSADALLLAQLAMREKAAGRATAMFTADANDAQRLIDEIAFF
APDLRCALFPDWETLPYDSFSPHQDLISERLATLWRISQKEADVVLVPATTALYRLAPPS
FLAGYTFHFKAKQKLEESKLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSPVPFR
VDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDDDARGRFRGRWRELLEGDPTK
SRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGPDATVVLHGDLEPAFQHFWQDTNER
YRLVQGDPERPALPPEALFLNAEQFYQRAKPHAQLAIRGDVPTEAPYAEFDKLPPFAVVR
GAEDPLVGLKAHIAKTPHRVLLIAESDGRRESLLDFLRASGVNPPAFDSLAEFEASADEK
VGIATAALASGFAWREQGIDLVTETELFATAPTTRRRNKKQEQVSDVEALIKDLSELNVG
DPVVHTAHGIGRYRGLIHMDLGQGNGPDGKPLLQEMLHLEYADKATLYVPVSQLHQISRY
TGVSADEAPLHKLGSGQWDKAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYSPADYEV
FANDFGFQETADQKAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAVTGGKQV
AFLAPTTLLAEQHYQTLVDRFAKWPVKVAEMSRFRSAKEITAAAKGLAEGQVDIVVGTHK
LLSQSVKFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRD
LSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEI
LPEARIAVAHGQMPERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFG
LAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEI
RGTGEVLGESQSGNMMEIGFQLYNEMLSEAVRALKAGQEPDLLSPLSVTTEINLHAPALL
PDDYCGDVHLRLSFYKKLATAKTPDQIDTLLEEIVDRFGKLPPQAQTLIDTHRLRVLARP
YGVVKVDAAPGIINITFRKDAPVDGMAIIQLIQKNKHIKLAGNEKLRIERELKEPKDRAQ
LVRDVLRSLGQPIVKETATA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggacctcccccacctcacggcgggcaagcgtttcacgctgccgcgtcccccgttgtcg
gccgatgcactgctgctggcgcagctggccatgcgcgagaaagccgccgggcgcgccacg
gcgatgttcaccgccgatgccaacgacgcccagcgcctgatcgacgagatcgccttcttc
gcgcccgacctgcgctgcgccctgttccccgactgggagacgctgccctacgacagcttc
tcgccccaccaggacctgatcagcgagcgcctggccaccctctggcgcatcagccagaag
gaagccgacgtggtgctggtgcccgccaccaccgcgctctaccggctggcaccgccgtcc
ttcctggccggctacaccttccacttcaaggccaagcagaagctcgaggaatcgaagctc
aaggcccagctcacgctggccggctacagccacgtgacgcaagtggtgagccccggcgaa
tacgcggtgcgcggcgggctgatcgacctgttccccatgggctcgccggtgcccttccgc
gtcgacctgttcgacgacgagatcgattccatccgcaccttcgatcccgacacccagcgc
agcctctaccccgtgcccgaggtgcgtctgctgccgggccgcgagttcccgatggacgac
gacgcacgcgggcgcttccggggccgctggcgcgagctgctggaaggcgacccgaccaag
agccgcatctacaaggacatgggcaacggcgtggccaccgccggcatcgagtactacctg
ccgctgttcttcgacgagacggccacggtgttcgactacctcggccccgacgccaccgtg
gtgctgcacggcgacctggagcccgcgttccagcacttctggcaggacaccaacgagcgc
taccggctggtgcagggcgaccccgaacgcccggcgctgccgcccgaagcgctgttcctg
aacgccgagcagttctaccagcgcgccaagccccatgcgcagctcgccatccgtggcgac
gtgcccaccgaggcgccctacgccgagttcgacaaactgccgccgttcgccgtggtgcgc
ggcgccgaagacccgctggtcggcctcaaggcgcacatcgcgaagacgccgcaccgcgtg
ctgctgatcgccgagagcgacggccgccgcgagagcctgctcgacttcctgcgcgccagc
ggcgtgaacccgccggccttcgactcgctggccgaattcgaagcctccgccgacgaaaaa
gtcggcatcgccaccgccgcgctggcgtcgggcttcgcctggcgcgagcaaggcatcgac
ctcgtcaccgaaaccgagctgttcgccaccgcgcccaccacgcgccggcgcaacaagaag
caggaacaggtcagcgacgtcgaggcgctcatcaaggacctgtcggagctgaacgtcggc
gacccggtggtccacaccgcgcacggcatcggccgctaccgcggcctgatccacatggac
ctgggccagggcaacggccccgacggcaagcccctcctgcaggaaatgctgcacctggag
tacgccgacaaggccacgctctacgtgccggtgtcgcagttgcaccagatcagccgctac
accggtgtcagcgccgacgaggcaccgctgcacaagctgggctccggccagtgggacaaa
gccaagcgcaaggctgccgagcaggtgcgcgactcggctgccgagctgctcaacatctat
gcccgccgcgccgcgcgtgagggccatgccttccgctattcgccggccgactacgaggtg
ttcgccaacgacttcggcttccaggaaaccgccgaccagaaggccgcgatccatgcggtg
gtgcaggacatgatctcgccccagcccatggaccgcctggtgtgcggcgacgtgggattc
ggcaagaccgaagtggcgctgcgcgccgccttcatcgcggtcaccggcggcaagcaggtg
gccttccttgcgcccaccacgctgctggccgagcagcactaccagacgctggtcgaccgc
ttcgccaagtggccggtgaaggtggcggaaatgagccgattccgctccgccaaggaaatc
accgccgccgccaaggggctggccgagggccaggtcgacatcgtggtcggcacgcacaag
ctgctgtcgcagtcggtcaagttcaagaacctgggcctgctcatcatcgacgaggaacac
cgcttcggcgtgcgccataaagaggcgatgaaggcaatgcgcgccgaggtcgacgtgctc
acgctcaccgccacgccgattccgcgcacgctgggcatggcgctggaaggcctgcgcgac
ctgagcgtgatcgccaccgcgccgcagcggcgccttgccatcaagaccttcgtgcgcaac
gaaggcaccggcgtgatccgcgaagccgtgctgcgggagctgaagcgcggcggacaggtg
tacttcctgcacaacgaggtcgagaccatcgagaaccgccgccagaagctcgaggaaatc
ctgcccgaggcccgcatcgccgtggcgcacggccagatgcccgagcgcgagctggagcgc
gtgatgcgcgacttcgtggcgcagcgctacaacctgctgctgtgctcgaccatcatcgag
accggcatcgacgtgccgaccgccaacaccatcgtgatgagccgcgccgacaagttcggc
ctggcgcagctgcaccagctgcgcggccgcgtcggccgttcgcaccaccaggcgtatgcc
tacctcatggtgcccgacacagagggcctgaccaagcaggcggcacagcggctcgacgcc
atccagcaaatggaagagctgggttccggcttctacctggccatgcacgacctggagatc
cgcggcaccggcgaggtgcttggcgaaagccagagcggcaacatgatggagatcggcttc
cagctctacaacgagatgctcagcgaggccgtgcgcgcgctcaaggccggccaggagccc
gacctgctgtcgccgctgtcggtcaccaccgagatcaacctgcacgcccccgccctgctg
cccgacgactactgcggcgacgtgcacctgcggctgtcgttctacaagaagctggccacc
gcgaagacgcccgaccagatcgacacgctgctcgaggaaatcgtcgaccgcttcggcaag
ctgccgccgcaggcgcagacgctgatcgacacgcaccgcctgcgcgtgctggcgcggccc
tacggcgtggtgaaggtcgatgccgcgccgggcatcatcaacatcaccttcaggaaagac
gcgccggtggacggcatggccatcatccagctgatacagaagaacaagcacatcaagctc
gccggcaacgagaagctgcgcatcgagcgcgaactgaaagagccgaaagaccgggcccag
ctggtgcgcgacgtgctgcgcagcctgggccaacccatcgtcaaggaaaccgccaccgca
tga
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