Variovorax sp. PMC12: C4F17_11630
Help
Entry
C4F17_11630 CDS
T05380
Name
(GenBank) hydrophobe/amphiphile efflux-1 family RND transporter
KO
K18138
multidrug efflux pump
Organism
vam
Variovorax sp. PMC12
Pathway
vam01501
beta-Lactam resistance
vam01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
C4F17_11630
01503 Cationic antimicrobial peptide (CAMP) resistance
C4F17_11630
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_11630
01504 Antimicrobial resistance genes [BR:
vam01504
]
C4F17_11630
Transporters [BR:
vam02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
C4F17_11630
Antimicrobial resistance genes [BR:
vam01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
C4F17_11630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
SecD_SecF
MMPL
Patched
DUF3226
Motif
Other DBs
NCBI-ProteinID:
AVQ81553
LinkDB
All DBs
Position
1:2507060..2510230
Genome browser
AA seq
1056 aa
AA seq
DB search
MAQFFIDRPIFAWVLSIVVMLAGLMAIRTLPLEQYPDIAPPRVSINATYTGASAKTVEDS
VTQVIEQQMKGLDNLLYMQATSNSSGVARLSLTFDAGTNIDVAQMQVQNKLQQAMSRLPQ
QVQSRGVTVTKGGNDFLMIVSMYSGDGSASAVDVGDYISSNLVDVISRIDGVGEVQTLGT
GYAMRLWLDPDKLRKYALIPSDVSAAITAQNAQVSAGQLGALPAAAGQQLNATITARSKL
QTAEQFENVVLRSTPDGAVVRLKDVARVELGAENLTVRSQLGGRPGAGLGVVLADGANAV
QVAEAVKARIEELKPLFPNQLQTFVSYDTTPFVSASIDEVVKALLEAMLLVVLVMYVFLQ
NLRATLIPAIAVPVVLLGTFGVLSLAGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM
HEEGLSPKEATRKSMAEITPALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMAL
SVFVALTLTPALCATLLKPVHKGEHAVPRRGLLGRLDRFFAAFNRGFDRSADRYEGIVGG
IVRRGKRSLVVYLLIAGVMALLFIRLPTSFLPDEDQAFLQVQVTLPPGASNARLQPVVEQ
VQQYFGKQAEVLSVNVITGQNGDQSSARAFVKLKDWSERTGAGQSAAELARRANKDLSTV
RDARVFVLLPPAVRGLGANAGFNFHLKDINGLGHEALVKARDQAIELLGQRPEVANVRSN
NLDDTPEFAVDIDDARAGALSLATSDIDSTLSSAMGGTYINDFLDKGRVKRVYMQGDTDF
RMLPADIDRWSVRNSLGQMVPFPSFSSSRWSYGSPQLQRYNGSPSYEFVGDAAPGVSSGD
AMAAVDAVMKQMPPGIGYEWTGASLQERLSGAQAPLLYAISILFVFLCLAALYESWSVPF
SVILVVPLGIVGALLFTSLRGLSNDVYFQVGLLTTVGLSSKNAILIVEFAKQLQEQGKGV
VEATLQAVRLRLRPILMTSLAFGFGVLPLAIGTGAGAGGRQSIGTAVLGGMVVGTALGIF
FVPLFFALIRGWLEGRRKARPAQETVAGTTAEQGGH
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atggctcagtttttcatcgaccggcccatcttcgcgtgggtgctttccatcgtcgtcatg
ctcgcgggcctgatggccatccgcacgctgccgctggagcagtaccccgacatcgcgccg
ccgcgcgtgtccatcaacgccacctacaccggcgcctcggccaagacggtcgaggactcg
gtcacgcaagtcatcgagcagcagatgaagggcctggacaacctgctctacatgcaggcg
accagcaactcgtcgggcgtggcgcggctgtcgctcaccttcgacgccggcaccaacatc
gacgtggcccagatgcaggtgcagaacaagctgcagcaggccatgtcgcgcctgccgcag
caggtgcagagccgcggcgtcaccgtcaccaagggcggcaacgacttcctgatgatcgtg
tcgatgtactccggcgacggcagcgcctcggcggtggacgtgggcgactacatctccagc
aacctggtggacgtgatcagccgcatcgacggcgtgggcgaggtgcagacgctgggcacc
ggctacgccatgcgcctgtggctcgaccccgacaagctgcgcaaatatgcgctcattccc
tccgacgtgagcgccgccatcaccgcgcagaacgcgcaggtctcggccggccagctgggc
gcgctgcccgcggccgccgggcagcagctcaacgccaccatcaccgcgcgcagcaagctg
cagacagccgagcagttcgagaacgtggtgctgcgctccacgcccgacggcgccgtggtc
cgcctgaaagacgtggcgcgcgtggaactgggcgcggagaacctcaccgtgcgctcgcag
ctcggcgggcgccccggcgcgggcctgggcgtggtgctggccgacggcgccaacgcggtg
caggtggccgaggcggtgaaggccaggatcgaggagctcaagccgctcttccccaaccag
ctgcagaccttcgtgagctacgacaccacgcccttcgtgagcgcctccatcgacgaggtg
gtcaaggcgctgctggaggccatgctgctggtggtgctggtgatgtacgtgttcctgcag
aacctgcgcgccacgctcattccggccattgcggtgccggtggtgctgctgggcaccttc
ggcgtgctgtcgctggcgggctattcgatcaacacgcttaccatgttcggcatggtgctg
gccatcggcctgctggtggacgacgccatcgtggtggtggagaacgtcgagcgcgtgatg
cacgaggaagggctctcgcccaaggaggccacgcgcaagtcgatggccgagatcacgccc
gcgctggtgggcattgcgctggtgctgtcggcggtgttcattccgatggctttcttcggc
ggctcaaccggggtcatctaccggcagttctcgatcaccatcgtctcggcgatggcgctg
tcggtgttcgtggcgctcacgctcacgccggcgctgtgcgccaccctgctcaagccggtg
cacaagggcgaacatgcggtgccgcgccgcgggctgctggggcggcttgaccgcttcttc
gcggccttcaaccgcggcttcgacaggagcgcggaccgctacgaaggcatcgtcggcggc
atcgtgcggcgcggcaagcgcagcctggtggtgtacctgctgatcgcgggcgtgatggcg
ctgctgttcatacgcctgcccacctcgttcctgcccgacgaagaccaggccttcctgcag
gtgcaggtgaccctgccgccgggcgcctcgaatgcgcggctgcagccggtggtcgagcag
gtgcagcagtacttcggcaagcaggccgaggtgctgagcgtgaacgtcatcacggggcag
aacggcgaccagagctcggcgcgcgccttcgtcaagctcaaggactggtccgagcgcacc
ggcgcgggccagtcggcggccgagctggcgcggcgcgccaacaaggacctgtcgacggtg
cgcgatgcgcgcgtcttcgtgctgctgccgccggcggtgcgcgggctgggcgccaacgcg
ggcttcaacttccacctgaaggacatcaacggcctgggccacgaggcgctggtgaaggcg
cgcgaccaggccatcgagctgctgggccagcggcccgaagtcgccaacgtgcgcagcaac
aacctggacgacacgcccgagttcgcggtggacatcgacgacgcgcgcgccggcgcgctg
agcctggccacgtcggacatcgacagcacgctgtcgagcgccatgggcggcacctacatc
aacgacttcctcgacaagggccgcgtcaagcgcgtgtacatgcagggcgacaccgacttc
cgcatgctgcccgccgacatcgaccgctggagcgtgcgcaacagcctgggccagatggtg
ccgttcccgtcgttctccagctcgcgctggagctacggctcgccgcagctgcagcgctac
aacggcagcccgagctacgagttcgtgggcgacgcggcgccgggcgtgagctcgggcgac
gccatggccgcggtggacgcggtgatgaagcagatgccgcccggcatcggctacgagtgg
accggcgcgtcgctgcaggagcggctttcgggcgcgcaggcgccgctgctctacgccatc
tcgatcctgttcgtgttcctgtgcctggccgcgctgtacgaaagctggtcggtgccgttc
tcggtgatcctggtggtgccgctgggcatcgtgggggcgctgctgttcaccagcctgcgc
gggctgagcaacgacgtgtacttccaggtcggcctgctgaccacggtggggctgtcgtcg
aagaacgcgatcctgatcgtggagttcgccaagcagctgcaggagcagggcaagggcgtg
gtcgaggccacgctgcaggcggtgcgcctgcggctgcggcccatcctcatgacctcgctg
gccttcggcttcggcgtgctgccgctggccatcggcaccggcgcgggcgcgggtggccgc
cagtcgatcggcaccgcggtgctgggcggcatggtggtgggcaccgcgctgggcatcttc
ttcgtgccgctgttcttcgcgctgatccgcggctggctggagggccggcgcaaggccagg
cccgcgcaggaaaccgttgccggtaccacggctgaacagggaggccactga
DBGET
integrated database retrieval system
