Variovorax sp. PMC12: C4F17_16210 Help Entry C4F17_16210       CDS       T05380                                  Symbol ligD Name (GenBank) DNA ligase D   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism vam  Variovorax sp. PMC12 Pathway vam03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:vam00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     C4F17_16210 (ligD)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:vam03400]     C4F17_16210 (ligD) Enzymes [BR:vam01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      C4F17_16210 (ligD) DNA repair and recombination proteins [BR:vam03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      C4F17_16210 (ligD) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S ParE_toxin Motif Other DBs NCBI-ProteinID:  AVQ82371 UniProt:  A0A2P1VB45 LinkDB All DBs Position 1:complement(3505510..3508050) Genome browser AA seq 846 aa AA seqDB search MGTTASAARKALARYHGKRDFSRTPEPEAGGQAGKGVLSFVIQKHHASHLHYDFRLELDG TLKSWAVPKGPCLDPSVKRMAVHVEDHPISYAGFEGTIPPKQYGAGSVIVWDRGDWLPEG DARKSLAAGKLKFELRGEKLHGHWTLVRMHGKGDESHEPWLLIKERDAEARPLADYDVLE AQPASVLSGRGVDEVGQPAKKAPDRAPAKASAKAVKKAVKKAVKKAVKKAVKKTALPASL QPQLATLASSPPASREDWLYELKFDGYRLLARIDKGEVRCFTRNGHDWTAKLPALAAALA KLPTGAAWLDGEITVEGKNGAPDFQALQNAFDSGATSAIVYWLFDAPFLDGEDLRDMPVE ERRARLAKLVGKKPPAPLRLSEAFDAAPGDLLASSARIGFEGIVGKRKGSPYVSRRSPDW IKLKNQRRQEFVIGGYTAPKGSRAGFGALLLGVHDEATGRLRYCGNVGTGFDAKRLADVK ARLDKLATEDCPFSPQPCGVKAQWVKPTLVAEVSFGEWTREDRVRHAVFQGLRADKPARD IRREQPEEGNITPMAQKITHADRVIDKHSGITKGQLAAYYDSVATLMLPHLRGRPVSLVR APEGVGGELFFQKHLQNSEIPGVRLLDPALDPGHEPLLQIDTKTGLLGAAQMNVIELHTW NATSRAIGKPDRMTFDLDPGEGVAWPQIQEAAILVRTLLDELGLPSFLKTSGGKGLHVVV PLRRQYDWDMVKGFSQAVVAHLAETIPSRFVAKSGPRNRVGKVFVDYLRNGFGATTVSAW SARSRPGLGVSVPVAWDELPTLTAADQWNVGNAAERFATGNKPWAAMERSRKGLAAAMKL LGYSGK NT seq 2541 nt NT seq  +upstreamnt  +downstreamnt atgggcaccacggcatcggcggcgcgcaaggcactggcgcgctaccacggcaagcgcgac ttctcgcgcacgcccgagcctgaggccggcggccaggcgggcaagggcgtgctgtccttc gtgatccagaagcaccacgcgagccacctgcactacgacttcaggctggaactcgacggc acgctcaagagctgggccgtgccgaaggggccgtgcctcgacccgagcgtgaagcgcatg gcggtgcacgtcgaggaccatccgatctcctacgccggattcgagggcaccattccgccg aagcagtacggcgcgggcagcgtcatcgtctgggaccgcggcgactggctgcccgagggc gacgcgcgcaagtcgctcgcggccggcaagctcaagttcgagctgcgcggcgagaagctg cacggccactggacgctggtgcgcatgcacggcaagggcgatgagtcgcacgagccctgg ctgctcatcaaggagcgtgacgccgaggcccgcccgctcgccgactacgacgtgctcgaa gcgcagccggcgagcgtgctgagcggacgcggcgtggacgaggtggggcagccggcgaag aaggcaccggacagggcgcctgcgaaggcaagcgcgaaggcggtgaaaaaggcggtgaag aaggcagtgaagaaggcagtgaagaaggcagtgaagaagacagcgcttcccgccagcctc cagccccagctcgccacccttgcgtcgtcgccgcctgcatcgcgcgaagactggctctac gagctcaagttcgacggttaccgcctgctcgcgcgcatcgacaagggcgaggtccgctgc ttcacccgcaacggccacgactggaccgccaagctgcccgcgctcgccgcggcgctcgcg aagctgcccaccggcgcggcatggctcgacggcgagatcacggtggaaggcaagaacggc gcgcccgacttccaggcactgcagaacgctttcgacagcggcgcgacgtcggccatcgtc tactggctgttcgacgcgccctttctcgacggcgaggacctgcgcgacatgccggtcgag gaacgccgcgcgcggcttgcaaagctcgtcggcaagaaaccgcccgcgccgctgcgcctg agcgaggccttcgacgcggcgccgggcgacctgctcgcgtcgtccgcgcgcatcggcttc gagggcatcgtcggcaagcgcaagggctcgccttacgtgtcgcgccgttcgcccgactgg atcaagctcaagaaccagcggcgccaggagttcgtgatcggcggctacaccgcgcccaag ggctcgcgcgccggcttcggcgcgctgctgctgggcgtgcacgacgaggccaccggccgg ctgcgctactgcggcaacgtcggcaccggcttcgacgcgaagcgccttgccgacgtcaag gcccggctcgacaagctggcgaccgaggactgcccgttctcgccgcagccttgcggcgtc aaggcacagtgggtcaaacccacgctggtggccgaggtctcgttcggcgagtggacgcgc gaagaccgcgtgcggcacgccgtgttccagggcctgcgcgccgacaagcccgcgcgcgat atccgccgcgagcagccggaggaaggaaacatcacccccatggcccagaagatcactcat gccgaccgcgtgatcgacaagcacagcggcatcaccaagggccagctcgcggcctactac gacagcgtggccacgctcatgctgccgcacctgcgcggacggcccgtgtcgctggtgcgc gcgcccgagggcgtgggcggcgagctgttcttccagaaacatctgcagaacagcgagatc cccggcgtgcgcctgctcgatcccgcgctcgaccccggccacgagccgctgctgcagatc gacaccaagaccgggctgctgggcgcggcgcagatgaacgtgatcgagctgcacacctgg aacgccacctcgcgcgccatcggcaagcccgaccgcatgaccttcgacctcgaccccggc gaaggcgtcgcgtggccgcagatccaggaggcggccattctggtgcgcaccctgctggac gaactgggcctgccttcattcctcaagaccagcggcggcaagggcctgcacgtggtggtg ccgctgcgccggcagtacgactgggacatggtcaagggcttctcgcaggcagtggtggcg cacctggccgagacaattccatcgcgcttcgtggccaagagcgggccgcgcaaccgggtg ggcaaagtgttcgtcgactacctgcgcaacggcttcggcgccaccacggtgagcgcgtgg tcggcgcgctcgcggccggggctgggcgtgtcggtgccggtggcgtgggacgagctgccc acgctcacggccgccgaccagtggaacgtcggcaacgcggccgaacgcttcgctaccggc aacaagccgtgggctgcgatggagcgcagccgcaagggcctggccgccgcgatgaagctg ctgggctacagcggcaagtaa

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