Variovorax sp. PMC12: C4F17_24525
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Entry
C4F17_24525 CDS
T05380
Name
(GenBank) hydrophobe/amphiphile efflux-1 family RND transporter
KO
K18138
multidrug efflux pump
Organism
vam
Variovorax sp. PMC12
Pathway
vam01501
beta-Lactam resistance
vam01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
C4F17_24525
01503 Cationic antimicrobial peptide (CAMP) resistance
C4F17_24525
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vam02000
]
C4F17_24525
01504 Antimicrobial resistance genes [BR:
vam01504
]
C4F17_24525
Transporters [BR:
vam02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
C4F17_24525
Antimicrobial resistance genes [BR:
vam01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
C4F17_24525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
SecD_SecF
Patched
Motif
Other DBs
NCBI-ProteinID:
AVQ83860
LinkDB
All DBs
Position
1:complement(5232519..5235647)
Genome browser
AA seq
1042 aa
AA seq
DB search
MIANFFIHRPVFAWVIAILIMLAGGVAIRTLPVSQYPDIAPPTVVVSANYPGASAQAVEN
SVTQVLEQQLKGIDGLLYFKSTSSSAGYADISITFRQGIDPDTAQVQVQNKVSQATSRLP
QAVQQQGVTVYKSQNNFLLIVALYDATDRRTDTDVADWMASNLRDPVSRVDGVGSVQAFG
AAYAMRIWLDPHRLASYQLMPSDITAAITAQNTQVSVGEIGARPSPAGQQLNATVTALSR
LQTPEQFRGIVLKTQADGAVVRLGDVARVEIGNESYAETTRLNGHPAAGAAIMLAPGANA
LTTARAVKARIAEMEPSLPAGLRVAYAEDTTRFVKISIQSVLKTLLEAIALVVVVMFLFL
QNWRATVIPAITVPVVLLGTFGVLAAFGYSINVLTLFGMVLAIGLLVDDAIVVVENVERV
MHEEGLDAKAATIKSMKEITGALVGIAVVVSAVFLPMTFFGGSVGVIYRQFSVTIIASMA
LSVLVAIVLIPALCARFLKPGVPPRTRGFLGAFNRRFDAAQGRYVGLLGRMLRKPLRFTA
VYAAIVAGMGLLYLGLPGGFLPEEDQGSVMVQVSLPAGATQSRTDAVNRAVEKHFLETEK
DTTDTIFTLAGWSYAGSGQHTGMAFVSLKDWSQRKDPEKRAHAIVERASAALSKQQRDAE
VYGMVPPPIEGLGQSNGFEFWLQDTSGMGPDKLVHKREALVRDANKDRRLQSVRANSIAN
TPQLQVDIDQVKASALRLSLDDVNTTLGIAWGGNYVNDFIDRGRVKRVYVQADAPYRSAP
EDMGQWFVRGSTGAMTPFSAFATTRWSQGASQLERYNGLPAVQIQGAAAQGTSSGTAMSA
VEAIARKQAGTGHAWSGLSYQERLSGGQAPLLFAVSILVVFLCLAALYESWSVPFSVMLV
IPLGVLGAVIAASLRGLSNDIYFQVGLLATIGLSAKNAILIIEFAEAALRRGVPLLDAVA
EGARLRLRPILMTSLAFLAGVVPLALATGAGSASQVAIGTGVFGGVLTATALGIFFVPLF
YLLVKRLAGRWGRSRLGTKQAA
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgcgaatttcttcatccaccggcccgtgttcgcatgggtcatcgccatcctcatc
atgctggcgggcggcgtggccatacgcacgctgccggtttcgcagtacccggacatcgcg
ccgcccaccgtcgtcgtctcggccaactaccccggcgcatcggcgcaggcggtggagaac
agcgtgacgcaggtgctcgagcagcagctcaagggcatcgacggcctgctgtacttcaag
tcgacgagcagctcggccggctatgccgacatcagcatcaccttccgccagggcatcgac
cccgacaccgcgcaggtgcaggtgcagaacaaggtcagccaggccaccagccggctgccg
caggcggtgcagcaacagggcgtgacggtctacaagtcgcagaacaacttcctgctgatc
gtggcgctctacgacgcgaccgaccgccgcaccgacaccgacgtggccgactggatggcc
agcaacctgcgcgacccggtgagccgcgtcgacggcgtgggctcggtgcaggccttcggc
gcggcgtatgcgatgcgcatctggctcgacccgcaccggctggcgagctaccagctgatg
ccgtcggacatcaccgccgccatcaccgcgcagaacacgcaggtgtcggtcggcgagatc
ggcgcgcggccgtcgcccgccggccagcagctcaacgcgaccgtgaccgcgctctcgcgg
ctgcagacgcccgagcagttccgcggcatcgtgctcaagacccaggccgacggcgccgtg
gtgcggctgggcgacgtggcgcgcgtggaaatcggcaacgagtcgtacgctgaaaccacg
cgcctgaacggccaccccgcagccggcgcggccatcatgctggcgcccggcgccaatgcg
ctgaccaccgccagggcggtgaaggcgcgcatcgccgaaatggagccctcgctgcccgcc
ggcctgcgcgtggcctatgcggaggacaccacgcgcttcgtgaagatctcgatccagtcg
gtgctcaagacgctcctggaggccatcgcgctggtggtggtggtgatgttcctgttcctg
cagaactggcgcgccaccgtgatcccggccatcaccgtgccggtggtgctgctgggcacc
ttcggcgtgctggcggccttcggctattcgatcaacgtgctcacgctgttcggcatggtg
ctggccatcggcctgctggtggacgacgccatcgtggtggtggagaacgtcgagcgcgtc
atgcacgaggaagggctcgacgcgaaggccgccaccatcaagtcgatgaaggagatcacc
ggcgcgctggtgggcattgcggtggtggtgtcggcggtgttcctgccgatgaccttcttc
ggcggctcggtgggcgtgatctaccggcagttctcggtgacgatcatcgcgtcgatggcg
ctgtcggtgttggtggccatcgtgctgatcccggcgctgtgcgcacgcttcctgaagccg
ggcgtgccgccgcgcacgcgcggtttcctcggtgcgttcaaccggcgcttcgacgccgcg
cagggccgctatgtggggctgctgggccgcatgctgcgcaagccgctgcgcttcaccgcc
gtgtatgccgccatcgtggcgggcatgggcctgctgtacctgggcctgcctggcggtttc
ctgccggaggaagaccagggcagcgtgatggtgcaggtctcgctgccggccggcgccacg
cagagccgcaccgacgccgtgaacagggcggtcgagaagcacttcctggaaaccgagaag
gacaccaccgacaccatcttcacgctggcgggctggagctatgccggctcggggcagcac
acgggcatggccttcgtctcgctcaaggactggtcgcagcgcaaggacccggaaaagcgt
gcgcacgccatcgtcgagcgcgcgagcgccgcgctctcgaagcagcagcgcgacgccgag
gtctacggcatggtgccgccgcccatcgagggcctgggccagtccaacggcttcgagttc
tggctgcaggacacctccggcatgggccccgacaagctggtgcacaagcgcgaggcgctg
gtgcgcgacgccaacaaggacaggcgcctgcagtcggtgcgcgccaacagcatcgccaac
acgccgcagctgcaggtcgacattgaccaggtcaaggcgtcggcgctgcggctgtcgctg
gacgacgtgaacaccacgctgggcattgcctggggcggcaactacgtcaacgacttcatc
gaccgcggccgcgtgaagcgcgtgtacgtgcaggccgacgcgccctaccgctcggccccc
gaggacatgggccagtggttcgtgcgcggcagcaccggcgcgatgacgccgttctcggcc
ttcgccaccacgcgctggtcgcagggcgcgtcgcagctggagcgctacaacggcctgccc
gcggtgcagatccagggcgcggccgcgcagggcacgagctccggcacggccatgtctgcg
gtcgaggccatcgccaggaagcaggcgggcaccggccacgcatggagcgggctgtcctac
caggagcgcctgtcgggcgggcaggcgccgctgctgttcgcggtgtcgatcctcgtggtg
ttcctgtgcctggccgcgctgtacgaaagctggtcggtgccgttctcggtgatgctggtg
attccgctgggcgtgctgggcgcggtgattgccgcgtcgctgcgcgggctgtcgaacgac
atctacttccaggtcggcctgctcgcgaccatcgggctgtcggccaagaacgcgatcctg
atcatcgagttcgcggaagcggcgctgcgccgcggcgtgccgctgctcgacgcggtggcc
gagggcgcgcgcctgcggctgcggccgatcctgatgacctcgctggccttcctggccggc
gtggtgccgctggcgctggccacgggcgcgggctccgcgagccaggtggccatcggcacc
ggcgtgttcggcggcgtgctgacggccaccgcgctgggcatcttcttcgtgccgctgttc
tacctgctggtgaagcggctggcggggcgctggggcagaagcaggctggggacgaaacag
gcggcctga
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