Variovorax sp. PMC12: C4F17_29325
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Entry
C4F17_29325 CDS
T05380
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00550
Peptidoglycan biosynthesis
vam01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
C4F17_29325
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
vam01002
]
C4F17_29325
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vam01011
]
C4F17_29325
Enzymes [BR:
vam01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
C4F17_29325
Peptidases and inhibitors [BR:
vam01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
C4F17_29325
Peptidoglycan biosynthesis and degradation proteins [BR:
vam01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
C4F17_29325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Beta-lactamase
Motif
Other DBs
NCBI-ProteinID:
AVQ85148
UniProt:
A0A2P1VJ07
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All DBs
Position
2:406846..408087
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AA seq
413 aa
AA seq
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MQFKTPSVLPLAFAIATGALISAAPAFAASHAAKPAAQKKPAATAPAAAPAAGQTAVAGG
PPALPAKAWLLMDFDSGEVLASANPDEPLPPASLTKMMTSFLVEQALRSGKLKKDDLVSV
SQNAWCRGSSTESCMYLPLNSQATVIDILRGIIVQSGNDASKAIAEHMAGTEEGFAKLMN
AEAQRLGMTHTHFVNSTGLPDPDHKSSARDLAILARAIIRDSSEYYPIYAEREFKYNGIK
QGNRNALLYTDPTVDGLKTGHTQEAGYCLVTSSKRNGMRLITVILNTNSAQARADETRAL
LGWGYGNFEKATPIQPNAVVTTTNVRFGKADTVAAGLGAPWTVTVPRGQKVNTSVQINPK
LEAPVAKGAVIGKVVAESNGKAVGEAPLVAQADVERAGFMLRTWQRVAGLFGK
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcaagactccttccgtcctcccgctcgccttcgcaatcgccacgggcgccctg
atttccgccgcacccgctttcgcggcctcccatgccgccaagcctgcagcccagaagaag
cccgctgccaccgcgcccgccgccgcaccggcggccggtcaaacggccgttgccggcggc
ccgccggcgctgccggccaaggcgtggttgctgatggacttcgattccggcgaggtgctg
gcctcggccaaccccgacgagccgctgccgccggcgtcgctgaccaagatgatgaccagc
ttcctggtcgaacaggcactccggtccggcaagctcaagaaggacgatctggtgtcggtc
agccagaacgcctggtgccgcggctcgagcaccgagtcctgcatgtacctgccgctgaac
agccaggccaccgtgatcgacatcctgcgcggcatcatcgtgcagtctggcaatgacgcg
tccaaggcgatcgccgagcacatggccggcaccgaggagggctttgccaaactcatgaat
gcggaagcccagcgcctgggcatgacgcacacgcatttcgtgaactccacgggcctgccc
gatcccgatcacaagtcgtccgcgcgcgaccttgcgatcctggcgcgcgcgatcatccgc
gacagctcggagtactacccgatctacgcggagcgcgagttcaagtacaacggcatcaag
cagggcaaccgcaatgcgctgctctataccgaccccacggtcgacggcctgaagaccggg
cacacccaggaggcgggctactgcctcgtgacttcctccaagcgcaatggcatgcgcctg
atcaccgtgatcctcaacaccaacagcgcgcaggcacgtgccgacgaaacccgcgcgctg
ctcggatggggatacggcaacttcgagaaggccacccccatccagcccaacgccgtggtc
acgacgaccaacgtccgcttcggcaaggccgatacggttgccgcggggctaggagcaccc
tggacggtgacggtgccgcgcggccagaaagtgaacacctccgtgcagatcaacccgaag
ctggaggcaccggtggccaagggcgcggtgatcggcaaggtcgtcgcggagtcgaacggc
aaggcggtgggcgaggcgccgctggtcgcgcaggccgacgtggagcgcgcgggcttcatg
ttgcgcacgtggcagcgtgtggccgggttattcggcaagtga
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