Vibrio anguillarum 775: VAA_02666
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Entry
VAA_02666 CDS
T01536
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
van
Vibrio anguillarum 775
Pathway
van03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
van00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAA_02666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
van03019
]
VAA_02666
03016 Transfer RNA biogenesis [BR:
van03016
]
VAA_02666
Enzymes [BR:
van01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VAA_02666
Messenger RNA biogenesis [BR:
van03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VAA_02666
Transfer RNA biogenesis [BR:
van03016
]
Prokaryotic type
tRNA degradation factors
VAA_02666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AEH32176
LinkDB
All DBs
Position
I:626364..628811
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AA seq
815 aa
AA seq
DB search
MSEIINNDPFADRESSNYENPIPSREFILEFLTEANVPMNRNDLFEALGLSGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMIKGHVIGHKDGHGWVRPDGSVGKDNDVLLPHH
QMRTIIHGDYVLVQPTGTDKRGRKEGRLVRVLEERKTQLVGRFFLENGYSYVVPDDSRIT
QDILIPNEHKGGARMGNVVVIEITDRGARARGMTGRVVEVLGENMAPGMETQIAIRTHQI
PHEWPQEVLKQVENLREEVPEEAKQGRVDLRQLPLVTIDGEDARDFDDAVYCEAKKGGGW
RLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTVSATGKISGYKHYEAVMNSHARLTYNKVHAILEGDEELRERYQAVVPHLEELYSM
YKVLKAARDERGGIEFETIETKFIFNAERKIDSIEPVVRNDAHKIIEECMILANIASASL
VEKAKEPALYRIHESPGEERLTGFRDFLGELGLNLAGGLEPSPTDYANLMKQIGERQDKE
LIQTMLLRSMKQAVYNADNCGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKESGNH
TDRWTTTGGYHYYFDDMDFYGQQCSMTERRADDATREVSDWLKCEYMQDHVGEELDGVIA
NVTGFGFFVRLTELHIDGLVHISTLANDYYQFDPVGQRLIGESFGNIYRLGDAVKVKVLS
VNLDDRQIDFEIVGTSRKLRGEGKTAKKRATDAREKARGKKVTSSKGKATPLVEATKRPD
EKSSEGSKPERKKSKTTKARKKKPAAKANKARASK
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaattatcaataacgatccttttgcggatcgagaatctagcaattacgaaaat
ccaattccaagccgagaattcatcctcgaatttctaaccgaagccaatgtaccgatgaat
cgtaatgatctttttgaggcattgggtttatctggtgaagagcaatacgaagggctacgc
cgtcgtttgcgtgcgatggagcgagatggccaattggtatttactcgtcgccaatgctat
gcattgccagaaaaactggaaatgatcaaaggtcacgtaatcggacataaagatggtcat
gggtgggttcgtcctgatggcagcgttggcaaagataacgatgttttgctacctcatcac
caaatgcgtaccattattcatggcgactacgtgctggtacaaccgacaggcacggataaa
agaggccgtaaagaagggcgtttggtccgagtgttggaagaacgtaaaacccaacttgtt
gggcgtttcttcctcgaaaatggctactcttatgtcgtgcccgatgattcacgcatcact
caagacattttgatccctaatgagcacaaaggcggagctcgcatggggaacgtggtggtg
attgaaattaccgatcgtggtgccagagcaagaggaatgacaggcagggttgttgaagta
cttggggaaaatatggctcccggtatggagacacaaatagcgattcgcactcaccagatc
cctcatgagtggccgcaagaagtattaaagcaagtcgaaaacctgagagaagaagttcca
gaagaggcgaagcaagggcgcgtggatttgcgtcaattacctttagtgactattgatggt
gaagacgcgcgtgactttgatgatgcggtgtattgcgaagccaaaaaaggtggtggctgg
cgtctctgggttgcgattgctgacgtaagttattatgtgcgccccgacacggctcttgat
aaagaagcgatcaaccgtggtaactcagtttacttcccatcgcaagtcgttcctatgcta
ccggaagtactgtcgaacggtctttgttcacttaatccacaagtcgaccgtctatgcatg
gtgtgcgagatgacagtctctgcaacgggcaaaatttcgggttacaaacattacgaagcc
gtgatgaactctcatgcccgtttaacttacaacaaagtacacgccattcttgaaggggat
gaagagctacgcgaacgttatcaagccgtggttcctcatcttgaagaactctattcgatg
tataaggtgctaaaagcagcgcgtgatgagcgtggcggtatcgaatttgaaacgattgaa
actaagtttatttttaatgctgagcgtaaaatcgacagcattgaacctgttgtccgtaat
gatgcgcacaaaataatcgaagagtgcatgatcctcgctaatattgcttcagcatcgctg
gtggaaaaagcgaaagagcccgctctgtaccgtatccatgaatcaccgggagaagagcgt
ttgaccggttttagggatttcttaggcgagcttggtttgaacttagcgggtgggctagag
ccttcgccaaccgattacgctaacttaatgaaacagattggtgagcgccaagacaaagag
ttgatccaaaccatgttactgcgttccatgaagcaggctgtgtataacgcggataactgt
ggtcactttggtttagcgctcaaacgctatgcgcactttacttcacctattcgtcgctac
cctgatctcctattgcaccgcgcaattaaatatttgattgccaaagaatcgggcaatcac
accgaccgttggacaaccacaggtggttatcactactattttgatgacatggacttctat
ggtcagcaatgttcaatgacagaacgccgtgctgatgatgcgacgcgcgaagtatctgat
tggctcaagtgtgaatacatgcaagatcatgtaggcgaagagcttgatggagtcatagcc
aacgtgacaggtttcggtttcttcgttcggttaactgagttgcacattgatggattggtc
catatttcaacgctagcgaatgactactatcaatttgatccagtgggacaacgattgatc
ggcgaaagttttggcaacatctatcgcttaggtgacgccgttaaagtcaaagtgttatcc
gtcaacttggatgatcgtcaaattgactttgaaatcgtgggcactagccgtaagctgcgc
ggagaaggcaagacagcgaagaaacgtgcaacggatgcacgagagaaagcacgtggcaag
aaggtgacgtcaagtaaaggaaaggcaactcctttagttgaagcgactaaacgcccagat
gaaaaaagtagtgaaggctcaaaacctgaacgaaaaaaaagcaaaacaacaaaagcacgc
aaaaagaaacccgcggccaaagcaaataaagcgcgtgctagtaaataa
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