Variovorax paradoxus S110: Vapar_1379
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Entry
Vapar_1379 CDS
T00916
Name
(GenBank) pseudouridine synthase, RluA family
KO
K06179
23S rRNA pseudouridine955/2504/2580 synthase [EC:
5.4.99.24
]
Organism
vap
Variovorax paradoxus S110
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vap03009
]
Vapar_1379
Enzymes [BR:
vap01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.24 23S rRNA pseudouridine955/2504/2580 synthase
Vapar_1379
Ribosome biogenesis [BR:
vap03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Vapar_1379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
Beta-lactamase
Motif
Other DBs
NCBI-ProteinID:
ACS18030
UniProt:
C5CSD2
LinkDB
All DBs
Position
1:1504522..1505634
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AA seq
370 aa
AA seq
DB search
MKNIIGAKQGPAAAPNPAVPGPAVQKAAAEAGAPHAAIKFITVDAESAGQRLDNFLFRHL
KGVPKTHVYRIIRSGEVRINKGRAQAETRIEAGDVLRLPPIRISPRAEEGATPPAPAREF
PVLLEDDAVLAIDKPAGVAVHGGSGVSFGVIEQLRTARPGAKFLELVHRLDRETSGILLV
AKKRSALVALQDQFRERETGKTYLALVEGAWPANKKVLDAPLAKYLLPGDGAGAGERRVR
VVAKDHPDAMRAVTLVRVLARLTLPGDAAPLSLLAVTIKTGRTHQIRVHLASAGHAIAGD
DKYGDFERQRVLQKLGLKRMFLHAWRLQFNHPATGERVALQAGLPPELHALMPPQAIEAL
AQHPTPTAND
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaacattataggtgcgaagcaaggccccgcggccgctccaaatcccgcagttcca
ggccccgcagtccaaaaggctgcggcggaggccggcgcgccgcatgcggccatcaagttc
atcaccgtcgatgcggaatccgcgggccagcggctggacaacttcctgtttcgccatctg
aagggcgtgcccaagacgcatgtctaccggatcatccgctcgggcgaggtgcgcatcaac
aaggggcgggcgcaggccgagacccgcatcgaggccggcgacgtgctgcggctgcctccc
atccggatatcgccgcgcgccgaagagggcgccacgccgcccgcgccggcgcgcgaattc
ccggtgctgctggaggacgacgcggtgctggccatcgacaagcccgccggcgtggccgtg
catggcggcagcggcgtgagctttggcgtgatcgagcaattgcgcacggcgcgcccgggc
gccaagttcctggaactggtgcaccggctcgaccgcgagacctcgggcatcctgctggtg
gccaagaagcgcagcgcgctggtggcgctgcaggaccagttccgcgaacgcgagaccggc
aagacctaccttgcgctggtcgagggcgcctggcccgccaacaagaaggtgctcgatgcg
ccgctcgccaagtacctgctgccgggcgacggcgcgggcgccggcgagcgccgcgtgcgc
gtggtcgccaaggaccatcccgacgccatgcgggccgtgacgctggtgcgcgtgctggcg
cggctcacgctgccgggtgacgccgcgccgctgtcgctgctggcggtcaccatcaagacc
ggccgcacccaccagatccgcgtgcaccttgcatcggccggccatgcgattgcgggcgac
gacaagtacggcgacttcgagcgccagcgcgtgttgcaaaagctcggcctcaagcgcatg
ttcctgcatgcttggcggctgcagttcaaccatcccgccaccggcgagcgcgtggcgctg
caggccggcctgcctcctgaactgcatgcgttgatgccgccccaggcgatcgaagcgctc
gcccaacatcccactcccacggccaatgactga
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