Variovorax paradoxus S110: Vapar_1660
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Entry
Vapar_1660 CDS
T00916
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Vapar_1660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_1660
Enzymes [BR:
vap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Vapar_1660
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Vapar_1660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACS18310
UniProt:
C5CTW0
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All DBs
Position
1:1793621..1796164
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AA seq
847 aa
AA seq
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MARANPLKRYKEKRNFGATPEPAEGGASAPGVLQFVVQKHWATRLHYDFRIELDGAMKSW
AVPKGPSYDTHDKRMAVHVEDHPIAYNQFEGEIPPRQYGAGKVIIWDKGSWTPIGDPRKG
YRAGRLKFELHGYKLRGKWTLVRMHGKADDKQDAWLLIKEHDEYARPAAEFSVVDQFPDS
VAQMPMPAAAVSAPAEAPAAPARKRGGKASASGMPADAVKAAMPAKLSPLLATLVDGPPH
DPQNWLYEIKFDGYRLLARIDAKGGVQLVTRNGHDWSSRMPHLVRAIERMKLAPGWLDGE
IVVLNESGGTDFQALQNAFDSENTRNIVYFLFDLPYYGGFDLTGVPLVERRGLLQALLAK
APPEIRFSEIFDAPPEDIVASACKIGLEGVIGKRKNSTYASRRSPDWIKLKCSQRQEFVI
GGYTDPKGSRVGIGALLIGVHDDKGDLIYAGAVGAGFNGRTLADMLERLKPLGIDKRPFK
NPTENDRRAHWVKPVLLAEVTFSEWTKDGHVRHPVFHSVRSDKPAKAIVREKPVHPAGAG
REAEAEPEPAATMPANFKVSHADRVVDPSTGITKVEVVRFYGLVAPLMMPHLKGRPVSFV
RAPQGIGGQLFFQKHLELGQMAGVRQLDAALWPKHPELIEIAGPLGLLSAAQMNVVEFHT
WNGLKTLIGKPDRMTFDLDPGEGVGWPMVLQAAELMRVVLDELGLAPFCKTSGGKGLHVV
VPLKRQYDWDTIKDFSQAIVRHMARTLPQMFVAKSGPDNRVGRIFIDYLRNGFGATTICA
WSVRARPGMGVSVPVEWQEVPTLTSGAQWTLRNIHARLDRGNDPWAAYAKAAKSPGAAMK
LLGFRVR
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgcaaaccccctgaagcgctacaaggaaaagcgcaacttcggcgccaccccc
gagcccgcggagggcggcgcatcggcgcccggcgtgctgcagttcgtggtgcagaagcac
tgggcgacccggctgcactacgacttccgcatcgagctcgatggcgccatgaagagctgg
gccgtgcccaagggcccgagctacgacacgcacgacaagcgcatggccgtgcatgtggag
gaccatcccatcgcctacaaccagttcgagggcgagataccgccccggcaatacggcgcg
ggcaaggtgatcatctgggacaagggcagctggacgcccatcggcgatccgcgcaagggc
tacagggcggggcgcctcaaattcgagctgcacggctacaagctgcgcggcaagtggacg
ctggtgcgcatgcacggcaaggccgacgacaagcaggacgcgtggctcttgatcaaggag
cacgacgagtacgcccgcccggccgcggagttcagcgtggtcgaccagttcccggacagc
gtggcgcagatgccgatgcccgctgcggcggtctcggcgcccgccgaggcgccggccgca
ccggccagaaagcgcggcggcaaggcatcggccagcggcatgcccgccgatgcggtgaag
gccgccatgccggccaagctctcgccgctgctcgccacgctggtcgacggcccgccgcac
gatccccagaactggctgtacgagatcaagttcgacggctaccgcctgctcgcgcgcatc
gatgcgaagggcggcgtgcagctcgtcacgcgcaacggccatgactggagcagccgcatg
ccgcacctggtgcgcgcgatcgagcgcatgaagctcgcgcccggctggctcgatggcgag
atcgtggtgctcaacgagtccggcggcacggacttccaggccctgcagaacgccttcgac
agcgagaacacgcgcaacatcgtctacttcctgttcgacctgccgtactacggcggcttc
gatctcaccggcgtgccgctggtcgagcggcgcggcctgctgcaggcgctgctggccaag
gcgccgcccgaaatccgcttcagcgagatcttcgatgcgccgcccgaggacatcgtggct
tcggcctgcaagatcgggctcgaaggcgtgatcggaaagcgcaagaacagcacgtacgcc
tcgcgccgctcgcccgactggatcaagctcaagtgctcgcagcggcaggagttcgtcatc
ggcggctataccgatccgaagggctcgcgcgtgggcattggcgcactgctgatcggcgtg
cacgacgacaagggcgacctcatctacgccggcgcggtgggcgcgggcttcaacggccgg
acgctcgccgacatgctcgaaagattgaagccgctcggcatcgacaagcggccgttcaag
aacccgaccgagaacgaccgacgcgcgcactgggtcaagccggtgctgctggccgaggtc
acgttttccgaatggacgaaggacggccatgtgcggcatccggtgttccacagcgtgcgc
tcggacaagcccgcgaaggccatcgtccgcgagaagccggtgcacccggcgggcgccggc
cgcgaagcggaggctgagcccgaacccgccgccaccatgcccgccaacttcaaggtctcg
catgccgaccgcgtggtcgatccgtcgaccggcatcaccaaggtggaggtggtgcgcttc
tacggcctggtcgcgccgctgatgatgccgcacctgaagggccggcccgtgtcgttcgtg
cgcgcgccgcagggcatcggcggccagctgttcttccagaagcacctggagctggggcag
atggccggcgtgcggcagctcgatgcggcgctgtggcccaagcaccccgagctgatcgag
atcgcggggccgctcgggctgctgagtgcggcgcagatgaacgtcgtcgagttccatacc
tggaacggcctgaagacgctcatcggcaagcccgaccgcatgaccttcgacctcgacccg
ggtgagggcgtcggctggcccatggtgctgcaggccgccgagctgatgcgcgtggtgctc
gacgaactgggcctggcgccgttctgcaagaccagcggcggcaaggggctgcacgtggtg
gtgccgctcaagcggcagtacgactgggacaccatcaaggatttctcgcaggccatcgtg
cggcacatggcgcgcaccctgccgcagatgttcgtcgccaagagcgggccggacaaccgc
gtcggccgcatcttcatcgactacctgcgcaacggcttcggcgcgaccaccatctgcgcc
tggtcggtgcgggcgcgccccggcatgggggtgtcggtgccggtggaatggcaggaggtt
cccacgctcacgagcggtgcgcagtggaccctgcggaacatccatgcacggctcgaccgc
ggcaacgatccgtgggctgcgtatgcaaaggctgcaaagagtccgggagccgcaatgaag
ctgctgggcttcagagttcgatga
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