Variovorax paradoxus S110: Vapar_2578
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Entry
Vapar_2578 CDS
T00916
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Vapar_2578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_2578
Enzymes [BR:
vap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Vapar_2578
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Vapar_2578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
IstB_IS21
AAA_30
SNF2-rel_dom
HemY_N
Motif
Other DBs
NCBI-ProteinID:
ACS19204
UniProt:
C5CKQ0
LinkDB
All DBs
Position
1:complement(2718812..2722309)
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AA seq
1165 aa
AA seq
DB search
MDLPHLTAGKRFTLPRPPLSADALLLAQLGMREKAAGRATAMFTADANDAQRLIDEIAFF
APELRCALFPDWETLPYDSFSPHQDLISERLATLWRISQKEADVVLVPATTALYRLAPPA
FLAGYTFHFKAKQKLEESKLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSLVPFR
VDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDDDARARFRSRWRELLEGDPTK
SRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGADATVVLHGDLEPAFQHFWQDTSER
YRLVRGDPERPALPPEALFLSAEQFYQRAKPHAQLAIRGNAGGGDIAAETPYAEFDRLPP
FAVVRGAEDPLVGLKAHIKATPHRVLLIAESEGRRESLLDFLRASGVSPPAFDSLAEFEA
SADEKIGIATAALASGFAWREQGIDFVTETELFATAPTTRRRNKKQEQVSDVEALIKDLS
ELNVGDPVVHTAHGIGRYRGLIHMDLGQGTDAEGKPLLQEMLHLEYADKATLYVPVSQLH
QISRYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAARQGHAFRYSA
ADYEVFANDFGFQETADQKAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAIT
GGKQVAFLAPTTLLAEQHYQTLVDRFAKWPVKVAEMSRFRSAKEITAAAKGLAEGTVDIV
VGTHKLLSQSVKFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMAL
EGLRDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQ
KLEEILPEARIAVAHGQMPERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSR
ADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAM
HDLEIRGTGEVLGENQSGNMMEIGFQLYNEMLSEAVRALKAGQEPDLLAPLSVTTEINLH
APALLPDDYCGDVHLRLSFYKKLATAKTPEQIDTLLEEIVDRFGKLPPQAQTLIDTHRLR
VLARPYGVVKVDAAPGVIHITFKKDPPVDSMAIIHLIQKNKHIKLAGNEKLRIERELKEP
KERAQMVRDVLRSLGQPIVKEPAPA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggacctcccccacctcacggcgggcaagcgattcacgctgccgcgtcctcctttgtcg
gccgatgcgctgctgctggcgcagctgggcatgcgcgagaaggccgcgggccgcgccacc
gcgatgttcacggccgacgccaacgacgcgcagcggctgatcgacgagatcgccttcttc
gcgcccgagctgcgctgcgccctgttccccgactgggaaacgctgccctacgacagcttt
tccccgcaccaggacctgatcagcgagcgcctggccacgctctggcgcatcagccagaaa
gaggccgacgtggtgctggtgcccgccaccaccgcgctctaccggctcgcgccgccggcc
ttcctggccggctacaccttccacttcaaggccaagcagaagctcgaggaatccaagctc
aaggcccagctcacgctggccggctacagccacgtgacacaggtggtgagcccgggcgaa
tacgcggtgcgcggcggcctgatcgacctctttccgatgggctcgctggtgccgtttcgc
gtcgacctgttcgacgacgagatcgactcgatccgcaccttcgaccccgacacccagcgc
agcctctatccggtgcccgaggtgcggctgctgcccggccgcgagttcccgatggacgac
gacgcccgcgcgcgcttccgcagccgctggcgcgaactgctcgaaggcgacccgaccaag
agccgcatctacaaggacatgggcaacggcgtggccaccgccggcatcgagtactacctg
ccgctgttcttcgacgagacggccacggtgttcgactacctgggtgcggacgccaccgtg
gtgctgcacggcgacctggagcccgcgttccagcatttctggcaggacacgagcgagcgc
taccgcctggtgcgcggcgaccccgaacgcccggcgctgccgcccgaggcgctgttcctg
agtgccgagcagttctaccagcgcgccaagccgcatgcgcagctcgcgatccgcggaaac
gcgggcggcggagacattgctgccgagacgccctacgccgagttcgacaggctgccgccc
tttgccgtggtgcgcggcgcggaggacccgctggtcggcctcaaggcccatatcaaggcc
acgccgcaccgcgtgctgctgatcgccgaaagcgaaggccggcgcgaaagcctgctcgac
ttcctgcgcgccagcggcgtgagcccgccggccttcgattcgctggccgagttcgaagcc
tcggccgacgagaagatcggcatcgccaccgccgcgctcgcctcgggctttgcctggcgc
gagcagggcatcgacttcgtcaccgagaccgagctcttcgccaccgcgcccaccacgcgc
cggcgcaacaagaagcaggaacaggtcagcgacgtcgaggcgctgatcaaggacctgtcc
gagctcaacgtgggcgacccggtggtccacaccgcgcacggcatcggacgctaccgcggc
ctgatccacatggacctgggccagggcaccgatgccgaaggcaagccgctcttgcaggaa
atgctgcacctggagtacgccgacaaggcgacgctctacgtgccggtctcgcagctgcac
cagatcagccgctacaccggcgtcagcgccgacgaggcgccgctgcacaagctgggctcc
ggccagtgggaaaaggccaagcgcaaggccgccgagcaggtgcgcgactcggccgccgag
ctgctcaacatctacgcccgccgcgccgcgcggcagggccatgccttccgctactcggcc
gccgactacgaagtgttcgccaacgacttcggcttccaggaaaccgccgaccagaaggcc
gcgatccacgccgtggtgcaggacatgatctcgccccagccgatggaccgcctggtctgc
ggcgacgtgggcttcggcaagaccgaggtggcgctgcgcgccgccttcatcgcgatcacc
ggcggcaagcaggtggccttcctcgcgcctaccacgctcctggccgagcagcactaccag
acgctggtcgaccgcttcgccaagtggccggtcaaggtggccgagatgagccgcttccgc
tcggccaaggagatcaccgcggcggccaagggcctggccgaaggcacggtcgacatcgtg
gtcggcacgcacaagctgctctcgcagtcggtcaagttcaagaacctgggcctgctcatc
atcgacgaggagcaccgcttcggcgtgcgccacaaggaggcgatgaaggccatgcgcgcc
gaggtcgacgtgctcacgctcaccgccacgccgattccgcgcacgctgggcatggcgctc
gagggcttgcgcgacctgagcgtgatcgcgaccgcgccgcagcggcgcctcgccatcaag
accttcgtgcgcaacgagggcacgggcgtgatccgcgaagccgtgctgcgcgaactgaag
cgcggcgggcaggtgtacttcctgcacaacgaggtcgagaccatcgagaaccggcgccaa
aagctcgaggagatattgcccgaggcccgcatcgccgtggcccacggccagatgcccgag
cgcgagctcgagcgcgtgatgcgcgacttcgtggcgcagcgctacaacctcctgctgtgc
tcgaccatcatcgagaccggcatcgacgtgccgaccgccaacaccatcgtgatgagccgc
gccgacaagttcggcctcgcgcagctgcaccagctgcgcggccgtgtcgggcgctcgcac
caccaggcctatgcctacctgatggtgccggacaccgagggcctgaccaagcaggcggcg
cagcggctcgacgccatccagcagatggaagaactgggttcgggcttctatcttgcgatg
cacgacctggagatccgcggcacgggcgaagtgctgggcgagaaccagagcggcaacatg
atggagatcggcttccagctctacaacgagatgctgagcgaggcggtgcgcgcgctcaag
gccgggcaggagcccgacctgctcgcgccgctgtcggtcaccaccgagatcaatttgcac
gcccccgccctcttgcccgacgactactgcggcgacgtgcacctgcgcctgtcgttctac
aagaagctggccaccgcgaagacgcccgagcagatcgacaccttgctcgaagaaatcgtc
gaccgcttcggcaagctgccgccgcaggcgcagacgctgatcgacacgcaccggctgcgc
gtgctcgcacggccgtacggcgtggtgaaggtggatgcggcgccgggcgtgatccacatc
acgttcaagaaggatccgccggtcgactcgatggccatcatccacctgatccagaagaac
aagcacatcaagctcgcgggcaacgagaagctgcgcatcgagcgcgagctgaaggagccc
aaggagcgtgcgcaaatggtgcgcgacgtgctgcgcagcctcggacaaccgatcgtcaag
gaacccgcccccgcatga
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