Variovorax paradoxus S110: Vapar_3579
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Entry
Vapar_3579 CDS
T00916
Name
(GenBank) diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
Organism
vap
Variovorax paradoxus S110
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
CHASE
GAF_2
PAS_3
PAS
PAS_4
Nucleos_tra2_N
Motif
Other DBs
NCBI-ProteinID:
ACS20196
UniProt:
C5CTK8
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Position
1:complement(3777679..3781002)
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AA seq
1107 aa
AA seq
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MSSSIWVRIRLPLVIFAAGMVLSIALGVSARQEIGRSAQARFDATAFDLARKVEARFDDY
VAVLIGLRARFNTSETVTRSDFRDYVAGLDLARAYPGFQAVNYAPRITVNDRQAFEEQVR
RDASLDTGVASSFAIKPPGERDTYYPLIYIEPQAGNERLLGNDLGAMPDRGDALEQGRDT
GGLVTSGRKVRIAGRESDIGLAMRLPVYRPGQPLDTLEQRRSAYIGSVGSGFSVAGMLSD
VVGTDAMRTLRLRLIDAGPSRGAIGTRVETRFVTTASFGERQLLFDSAALARPAAAPARS
LERMLGFELGGHSWLVEVGQDENQVFGPLDKAIPWFIVLGGLATSMLLAGIVFSLTTARS
RAQILANEMTRHLRTSERQLEEAQHLASLGSWILDPETGALQCSEEARRILGFEAGHLRP
ELPALLSRVPAAERPAVEQQIAQASRSMERSEFEHHLCLPDGTERWLHVIAQSAEEDGKT
MVRGTVRDATRPRKDALRQGLEYRIARLLAGDGRAETVITQALEALCTDLRWDCGALWSV
GEDGVVRCAAAWHADHIPPAVRQFASDSRSFEYRADEGSLGRAWKTGGIVQIDVLAAPGH
FARDAMAREAGLAVGIVVPMAVTDSITALELLGSNPYAIDAQTQESLRVIALQIAQYKQR
KQAERSLRFMASHDGLTGLFNRAALQHELARAIKRSNRHQKQFAVIFVDLDRFKHINDTL
GHGVGDEMIKICGERLTALLREADVVARFGGDEFVLLLENLSSANDAAGLAEKVLACCAE
PFFLAGRELHVSASVGVSIYPDNGADAEALLKNADTAMYRAKERGRNTFRFYAAKMNAQN
TEQLMLESALRHALERGELEMHYQPKMDLQTQRIVGVEALMRWHHPILGMIPPVQFIPIA
EELGLIVSLGKWALERACADSRSWQKYGLPKVLMSVNLSPRQFESRTLIADIQAVLEASG
LEPSLLELEITEGAVMANPEHAAKLLRAIRDMGVGLAIDDFGTGYSSLSYLKHFPLSTVK
IDRSFINDLSQDADARALIDGIITLAHGLRMKVVAEGIETTAQLDYLRSHGCDEAQGYWL
CKPVPADEVRNFMARHLRNQFAPSEAA
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgtccatctgggtcaggattcgcttgccgctggtgattttcgcggctggcatg
gtgctgtcgatcgccctcggcgtctccgcccgccaggagatcgggcgcagcgcccaggcg
cgcttcgacgccaccgccttcgatctggcgcgcaaggtcgaggcccgcttcgatgactac
gttgccgtcctgatcggattgcgtgcgcgattcaacacctccgagaccgtgacgcgaagc
gatttcagggactacgtcgcggggctggacctggcgcgcgcctaccccggtttccaggcc
gtcaactatgcgccccgcatcacggtcaacgacaggcaggccttcgaggaacaggtccgc
cgcgatgccagcctcgacaccggcgttgcctccagcttcgccatcaagccgcccggtgag
cgggacacgtactacccgctgatctacatcgaaccgcaggccggcaacgagaggctgctc
ggcaatgacctgggcgcgatgcccgacaggggagacgcgctcgagcaggggcgcgacacc
ggcgggctcgtcacgtccggccgcaaggtccgcatcgcgggccgcgagtccgacatcgga
ttggcgatgcggctgccggtctaccgccccgggcaaccgctcgatacgctcgaacagcgg
cgcagtgcctatatcggttcggtcggctcgggcttcagcgtcgcagggatgttgagcgac
gtggtgggtaccgacgccatgaggacgctccggttgcgcctgatcgatgccgggccgagc
cggggagcgatcgggacacgggtcgagaccaggttcgtgacgacggcctcgttcggcgaa
cggcaattgctgttcgacagcgcggccctggccaggcccgctgccgcacctgcgcgcagc
ctggagcgcatgctcggcttcgagttgggcggccactcctggctcgtggaagtcggccag
gacgaaaaccaggtcttcggcccgctcgacaaggcgatcccgtggttcatcgtccttggc
ggcctggccaccagcatgctgcttgccggcatcgtcttttcgttgaccaccgcacgcagc
cgagcccagatcctggcgaacgagatgacccgccacctgcgcacgagcgaacggcagctg
gaggaggcccagcacctggcaagcctgggcagctggatcctcgatcccgaaaccggagcc
ctgcagtgctccgaagaagcccggcgcatcctgggcttcgaggccggccacttgcggccg
gagctgcccgcgctgctctcgcgtgttccggccgcagaacgccccgcggtcgaacagcag
atcgcgcaggcctcccggtccatggaacgcagcgaattcgagcatcacctgtgcctgccc
gacggcaccgagcgctggctccacgtcatcgcgcagtcggccgaagaagacggaaagacg
atggtgcgcggcaccgtgcgcgacgccacgcggccgcgcaaggatgcgttgcgccagggg
ctcgaatacaggattgcccggctgcttgccggcgatggcagggccgagacggtgatcacc
caagcgctggaagccctgtgcaccgacctgcgctgggactgcggcgcgttgtggagcgtt
ggcgaggacggcgtggttcgctgcgccgccgcctggcatgccgaccacattcccccggcg
gtgcggcaattcgcctccgacagccggtcgttcgaataccgggccgacgaaggctcgctg
ggccgcgcctggaaaaccggcggcatcgtgcaaatcgacgtgctggcggctccgggccat
ttcgcgcgcgatgcgatggcccgcgaggccgggctggccgtcggcatcgtcgtgccgatg
gccgttaccgattcgatcacggcgctggagctccttggctccaatccgtacgccatcgac
gcccagacgcaggagtcgctgcgtgtgatcgccttgcagatcgcccagtacaagcagcgc
aagcaggcggagagaagccttcgtttcatggccagccacgacggactgaccggcctgttc
aaccgcgctgcgctgcaacacgagcttgctcgcgccatcaagcgcagcaaccgccatcaa
aagcagttcgcggtgatattcgtcgacctggatcgcttcaagcacatcaacgacacgctg
ggccacggcgtgggcgacgagatgatcaagatctgcggcgagcgcctcacggcgctgctg
cgcgaggcggatgtcgtggcgcgtttcggtggcgatgagttcgtgctgctcctggagaac
ctgtccagcgcaaacgatgccgcggggctcgccgaaaaagtgctggcctgctgcgccgag
cctttcttcctcgcggggcgcgaactgcacgtcagcgccagcgtcggcgtgagcatctat
ccggacaacggcgcagacgccgaagcgctcttgaaaaatgccgatacggcgatgtaccgg
gccaaggaaagaggccgcaacaccttccggttctacgccgcgaagatgaatgcgcagaat
accgaacagctgatgctcgaaagcgcgctgcgccatgccttggagcgtggcgagctcgaa
atgcactaccagccgaagatggatctgcagacccagcgcatcgtcggtgtcgaggcgctg
atgcgctggcaccatccgatcctgggcatgatcccgccggtgcagttcattccaatcgcc
gaagaactcggcctgatcgtgtccttgggcaaatgggcgctggagagggcttgcgccgat
tcgcgttcgtggcagaaatacggtttgccgaaggtgttgatgagcgtcaatctatcgccg
cgccaattcgaaagccgcacgctcatcgccgacatccaggctgtcctggaagcctcgggg
ctggagccgtcgctgctggagctggagatcaccgaaggcgcggtgatggcgaatcccgag
catgcggcgaagttgctcagggcgatccgggacatgggcgtcggccttgcgatcgacgat
ttcggaacgggctattcctcgctctcctacctcaagcacttcccgctgtcgacggtcaag
atcgaccgctccttcatcaacgacctgtcgcaggacgccgacgcgcgggcgctcatcgac
ggcatcatcaccctggcccacgggctgcggatgaaagtggtcgccgagggcatcgagacc
acggcccagctcgattacctgcgcagccacggttgcgacgaggcccagggctattggctg
tgcaagcccgtgcctgccgacgaggtgcgcaatttcatggcgcgccacctgcgcaaccag
tttgctccatcggaggcggcctga
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