Vibrio aquimaris: FIV01_09185
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Entry
FIV01_09185 CDS
T06969
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vaq
Vibrio aquimaris
Pathway
vaq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vaq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FIV01_09185 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vaq03400
]
FIV01_09185 (mfd)
Enzymes [BR:
vaq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FIV01_09185 (mfd)
DNA repair and recombination proteins [BR:
vaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FIV01_09185 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QFT26599
UniProt:
A0A5P9CJU5
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All DBs
Position
1948756..1952217
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AA seq
1153 aa
AA seq
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MPITSLFNLVSSSGAGDKKQVGNLQGASLALAVAELANQHDSHTLLAVADPQTALKLLQE
VEQFTDQEVSLFPDWETLPYDSFSPHQEIISDRIARLYRLPTQNTGITIVPISTLLQRQS
PRDFLMQHTLMVKVGDRYSLEKLRIQLEKSGYRHVDQVFGPGEYASRGSILDLFPMGSND
PFRIDFFDDEIDTIRTFDPENQRSIEDVQDICLLPAHEFPTSEGAIEDFRIRWRQRFETR
REPESVYVQVSKGIWPAGIEYWQPLFFDHTETLFDYIADDSQLITVGDLEGAIDHFLSDT
EYRYEQRKIDPLRPLLPPEELWLKKDELFSHFKTLPQVHLSTDAIVEKQGRVNPTIQALP
TLAAQHQNKEPLAALRQFSESFAGKVMFSVESEGRREALLELLQRIKLRPVEFDSFSAAI
QADSKFALVLGAAEHGFLFGDQQLALICESDLLGDRVIQRRRKDRKTTNSDAVIRNLAEL
KSGQPVVHIDHGIGRYIGLQTLEAGGLKTEYVTLEYQNEAKLYVPVASLNLISRYSGGAE
ESAPLHKLGGEAWAKARRRAAEKVRDVAAELLDVYAKRELKPGYKFALDRDQYATFKAGF
PFEETDDQSMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQVLQDIEAGKVDLVVGTHKLLSDD
IKFNDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQHDTAVVREAVLREIMRGGQVYFLHNQVETIEKVAADLEKLIPEAR
VTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDATKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKDGKEPSLDELLREQTEVEMRLPALLPDDYI
PDVNTRLSMYKQIASVSEPSELEDLKIELIDRFGLLPDATKNLLSVSEIKLEAGSLKVKK
VEAHDKGGFIEFYPDADINPTYLVKLLQSQPQKFAMEGPTKFKFTVPLVDRRKRIQFVSD
MLGEFRRNLLPQA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgcctattacatcacttttcaatctggtcagttcatctggagccggagataaaaaacag
gtcggtaatttgcaaggtgctagcctagcacttgcggttgctgaactcgctaaccagcat
gatagccataccttattggctgtcgcggatccacaaacggcccttaagctgttacaagaa
gtcgagcaatttaccgatcaagaagtgtcactgtttccagattgggaaacgcttccttac
gatagtttctcaccccatcaggaaattatttctgatcgcattgcccgtttgtatcgcctt
cccacccagaatacgggcatcacgattgtgccaatcagcacattattgcaaagacagtct
ccccgagacttcttaatgcagcataccttgatggtaaaagtcggcgatcgctattctttg
gaaaagctgcgtattcagcttgaaaaatccggctatcgccatgtggaccaagtgttcggt
cccggagaatacgcaagcagaggctcgattctcgaccttttcccaatgggttctaatgat
ccatttcggattgatttttttgatgacgagattgatacgatacgcacttttgaccctgaa
aatcagcgctcgattgaagatgttcaagacatctgtttgctcccagctcatgagtttcct
acttcggaaggcgcgattgaagactttcgtatccgctggcgccagcgctttgaaactaga
agagagcccgaatctgtttatgtccaagtctctaaagggatctggcctgccggaatagaa
tattggcaacctctatttttcgatcacacagaaaccttgtttgactatatcgcagatgat
agtcaactgatcactgtcggcgatttagaaggcgcaatagatcatttcctatcagataca
gaatatcgatatgagcagcgtaaaatcgatccattacgccccctacttccacctgaagag
ctgtggcttaaaaaagatgaattgtttagtcactttaagaccttgcctcaggtgcattta
tcgacagatgccatcgtagaaaagcagggccgggtaaatccaaccatccaagctttacct
acacttgctgcccagcaccaaaacaaagagccattagccgcactgcgtcagttcagtgaa
tcttttgctggtaaggtcatgttctctgtcgaatccgaaggtcgcagagaagctttattg
gagcttttacagcgcatcaaacttcgtcctgttgaatttgatagcttttctgcggcgata
caggctgacagtaaattcgccttagtcctaggcgcggcagaacatgggtttctgtttggc
gatcaacaactggcgctgatatgcgaaagtgacttattaggcgatagagtgatccaacgt
cgccgaaaagatcgcaaaaccaccaacagcgatgctgttattcgtaaccttgcagaactc
aaatcaggtcagcccgttgtccatatcgatcatggaattgggcgttatatcggtttgcaa
acgcttgaagccggtggcttaaaaacagaatacgtcaccctagaatatcaaaatgaggca
aaactctatgtaccagtagcgtctctgaatctgatcagtcgctattctggaggcgctgaa
gaatcagcacctttacacaagttaggaggagaagcttgggctaaagctcggcgccgcgcc
gctgaaaaagtacgtgatgttgccgcagagctgctcgatgtctatgccaaacgcgagcta
aagccagggtataaatttgcgctcgatcgcgaccaatacgccacgtttaaggcgggtttc
ccatttgaagaaaccgacgatcagtccatggcgatcaacgccgtgatgtcagacatgtgc
caagccaaagcaatggatcgcctcgtgtgtggtgatgttggctttggtaaaacagaagtt
gccatgcgagctgcgtttgtcgccacagacaatggcaagcaggtggcggttttagtccca
acaacattgcttgcccagcagcattttgaaaactttagagatcgttttgccaacctacca
attcgggttgaagtactctctcgttttaaaaccgccaaagaacaaaaacaagttcttcaa
gatattgaagcaggtaaagtagacttagtggtcggaacccacaagcttttatccgatgac
attaagtttaacgatctcggtcttctaattgttgatgaagaacatcgctttggtgtccgt
caaaaagagaaaatgaaggcaatgcgagcagatgtcgacatactgaccctcaccgcaaca
ccaattcctcgaacactgaacatggcgatgagtggcatgcgtgatttgtctatcatagcc
acgcctccagccagacgcttagcgatcaaaacttttgttcgccagcacgacactgctgtt
gttagagaagcggttctgcgtgaaattatgcgtggcggccaagtttactttttgcataat
caagtcgaaaccattgaaaaagtggcagccgatctagaaaagttaatcccagaagctcga
gtcactgtcgctcatggtcaaatgcgtgaacgcgagcttgagcggatcatgaatgatttc
taccatcagcgttttaacctcttagtgtgtaccaccattattgaaactggtatcgatgtc
ccaacagccaataccatcataatggatagagctgataacctcgggctggctcaattacat
caattgcgcggccgagttgggcgttcacaccatcaagcttatgcctacttactcaccccc
catccaaaggccatgactaaagatgcaaccaaacgcttggatgccatcgcctcgctggaa
gatcttggggcaggctttacgctcgcgacacacgacctagaaatccgtggcgctggtgaa
ttgcttggtgatgagcaaagtggtcaaattcaatctgttggctttaccctttacatggaa
atgcttgagcaagcggttgaagcattgaaagacggtaaagaaccttctttagatgaacta
ttgcgagagcaaacagaagtggagatgcgcctgcctgctttgctccctgacgactacatc
ccagatgtcaatacacgcttatctatgtacaaacagatagcaagtgtctctgaaccctca
gaattggaagatctcaaaattgagttaattgaccgctttggtcttttacctgacgcaacc
aaaaacttactctcagtgtctgaaattaaactcgaagcaggcagcctgaaagtgaagaaa
gttgaagcccatgacaaaggtggatttattgagttctatccggatgctgacattaatccg
acctatttagttaaactattgcaatcacaaccacaaaaattcgcaatggaaggcccaact
aagtttaagtttacggtaccattagtggacagacgtaagcggattcaatttgtcagtgat
atgttgggagaattccgccgtaaccttctaccacaagcctga
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