Vigna angularis (adzuki bean): 108328481
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Entry
108328481 CDS
T04660
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1b
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108328481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
var04121
]
108328481
03036 Chromosome and associated proteins [BR:
var03036
]
108328481
Enzymes [BR:
var01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108328481
Ubiquitin system [BR:
var04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108328481
Chromosome and associated proteins [BR:
var03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
108328481
Noncanonical PRC1 (PRC1.1)
108328481
Noncanonical PRC1 (PRC1.3/1.5)
108328481
Noncanonical PRC1 (PRC1.6)
108328481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-RING_UBOX
zf-RING_6
zf-UDP
zf-C3HC4_5
zf-RING_11
zf-rbx1
zf-C3HC4_4
zf-Nse
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
108328481
NCBI-ProteinID:
XP_017417843
LinkDB
All DBs
Position
3:17484463..17493941
Genome browser
AA seq
404 aa
AA seq
DB search
MKNKRNKQNLRRNAPKGLTSQLGIEDDDEVLYPLDLADLRKDVECPICLGIIRNTRMVME
CMHRFCKECIEKSFRLGNNECPACRTHCSSRRSLREDIVFDEVIAVVFPNIDEYEKKEIA
FSDDAKNNIKSMQEAYGQTLERQNEALRKKAAAAAASGSKDKYSRSGTQTLRRSARNESA
FSESSSSRDMTLPPIAEERETQVIPVRDFADLQIQPQSSQHETNARTVAGGTIQSLIASS
DKLVWGRFGPRSHTNSNARHAAALRSNRLERFIDHLQNSNQNDDELDIYIKLVSFEEERV
TNLARPYLNCRPTLSIDQLCQYVAIETLLQTEEIELYVVKGCEPGFVSGREKFVADKYET
QFLERGDKTLAEIIPNNLSLGHLVLAYKRKKWNLNEVLSCSGSE
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataagagaaacaagcaaaatcttcgtcgaaatgcacccaaaggtcttacaagt
caattagggattgaagacgatgatgaagtgttgtatcctttagacctggcagacctacga
aaggatgtcgaatgcccaatttgccttgggatcattcgaaatacaagaatggtcatggaa
tgcatgcatcgcttttgcaaggagtgcatagagaaatcctttcgcctcggtaacaatgaa
tgccctgcttgtcgtactcattgttcaagccgaagatcgctaagggaagacatcgtcttt
gatgaagtgattgctgtcgtttttccaaacattgatgaatacgagaaaaaggaaatagct
ttttcggatgatgcaaagaataatataaagtcaatgcaagaagcgtatggccagactctt
gaacgacaaaatgaggcactgagaaagaaggctgctgctgctgcagcttctgggtcaaaa
gataaatactcaaggagtggaactcagacactgagaagaagtgcaagaaatgaaagtgca
ttttcagaatctagttctagcagggacatgacattgcctcctattgctgaagagagagag
acacaagtcatacctgtcagagactttgctgatttacagatacagccacaaagctctcag
catgagactaatgcaagaacagttgcaggtggaacaattcaaagtctcattgcctcatct
gataaacttgtatgggggcgatttggccccaggagtcacaccaacagcaatgctaggcat
gccgctgctttgaggagcaatcgcttggagagattcattgatcatctgcaaaactccaat
caaaatgatgatgagctggacatctatatcaaacttgtctcttttgaggaagaaagagtg
acaaatttggcaaggccataccttaactgcagacctactctctcaatcgaccaactttgc
cagtatgttgccattgaaaccttgctgcaaactgaagaaattgaattgtacgtggtgaag
gggtgtgaacctggctttgtaagcggtcgtgaaaaatttgttgcagacaaatatgagact
caatttcttgagagaggggataaaactttggctgaaatcataccaaacaatctcagcctt
ggccatctggtcttagcttacaagaggaagaagtggaacttgaatgaagtgttatcctgc
tctggttctgaatga
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