Vigna angularis (adzuki bean): 108331518
Help
Entry
108331518 CDS
T04660
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108331518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
var03036
]
108331518
Chromosome and associated proteins [BR:
var03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
108331518
Chromatin remodeling factors
NuRD complex
108331518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
Helicase_C
Chromo
DUF1087
HDA2-3
ResIII
PHD
CHDCT2
DEAD
PHD_4
zf-HC5HC2H
C1_1
C1_2
Motif
Other DBs
NCBI-GeneID:
108331518
NCBI-ProteinID:
XP_017421730
LinkDB
All DBs
Position
4:complement(31626826..31650234)
Genome browser
AA seq
1425 aa
AA seq
DB search
MSSLVERLRVRSDRRPIYNLDESDDDADFLPRKPGTTQEKLERIVRTDAKEDLCQACGEN
ENLVSCETCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDA
TKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASINTS
DDDFVAIRPEWTTVDRILSCRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFN
RLRSRSSKFSSSKHKQSVKDDTELKKQQKEFQHYEHSPEFLSGTLHPYQLEGLNFLRFSW
SKQTHVILADEMGLGKTIQSIAFLASLFEEGVSPHLVVAPLSTLRNWEREFATWAPHMNV
LMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQLISENKQERIKFDVLLTSYEMINFDT
TSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFL
DAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELS
SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAYK
QLLETSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGA
ERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL
GQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKEL
FADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEEEDGFLKAFKVANFEYVDEA
EAAAEEAAAQKRALENVNSSERTHYWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVEE
DDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTGTATAKRPYKKKARNSSEPLPLMEGEGK
AFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKEMGIIFQYFFLFTYN
FPADGVPKDGLRIQDVLVRIAVLLLIRDKVKFASQHPQTPLFSDDILLRYPGLKGAKIWK
EEHDLVLLRSVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGQVGSQPQNGAN
LTSAEVPNSQSRENGGSDIPADGAQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKR
VLLLEKGLNAEYQKEYFGDPKSNDELKSEPKAPKLGETDTQMIDQLPQVETIATEEISSA
CDSDPNRLELVRLYNEMCKIMEENPMDLVQTSLAREPAELHVGKNFLPVETICKDIDRIL
TPTEEQSAADIPMSNSENKSEVMSKSEILGAKSLPTPTPHDSANNESKDMLIESETIKES
CSSLVKDTNEIQTLPDKEKSNTVMDETMTDAQXNDNPEKYDAGAL
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtttggtggagaggcttcgtgtaagatcggatcgcaggccaatttataatctt
gatgagtcagacgatgatgctgattttttgccaagaaaacccgggacaacacaggaaaag
ttggagagaatagtaagaactgatgcgaaagaggatttatgtcaagcctgcggtgaaaat
gagaatcttgtgagttgtgaaacttgcacttatgcttaccatcctaggtgtttacttcca
ccccttaagggacctcttccagacaattggagatgcccggaatgtgttagcccacttaat
gatattgataagatattagattgtgagatgcgacctactacagctgctgacaatgatgcc
acaaaattagggtcaaaacaaatttttgttaaacaataccttgttaagtggaaaggccta
tcatatctgcactgcacatgggtgccggagaaagagtttttgaaggcatttaagactcat
cctcgtctaaagacaaaagtgaacaacttccatcagaaaatggcgtctatcaatacctct
gatgatgactttgttgccattcgacctgagtggactacagttgaccggatactttcttgc
aggggtgatgatgatgagagagaataccttgtgaagtggaaggaacttccatatgatgag
tgttattgggagtttgaatcagatatttctgcatttcagccagaaatagaaagattcaat
agattgcggtctagatccagtaaattttcttctagtaaacataaacagagtgtcaaagat
gatactgaattgaagaaacagcagaaagaatttcaacattatgaacacagccctgagttt
ctctcaggtacactgcacccatatcagcttgaaggcttgaacttcttacgattctcttgg
tccaagcagactcatgttatacttgctgatgaaatggggcttggaaaaaccatacaaagt
attgctttcctggcatctctttttgaagagggtgtctccccacatctggtggttgctcca
ctttcaactctgcgaaattgggaacgtgaattcgcaacatgggcacctcatatgaatgtg
ctaatgtatgttggatctgcccaagctcgtagtgtaataagagagtatgaattttacttt
ccaaagaaacaaaagaagatcaagaaaaagaaatctggtcagctaattagtgaaaacaag
caagagaggattaaatttgatgttcttttgacatcgtatgagatgatcaactttgacaca
acatcactaaaacctataaaatgggagtgcatgatagtcgatgaaggtcaccgtttgaaa
aataaggattctaaattattttcctcactcaagcaatattctagcaggcatcgtgttctc
ttgacaggaactcctcttcagaacaacttggatgagctttttatgcttatgcatttcctt
gacgctgggaagtttggaagtttagaggagttccaggaagagtttagggatatcaatcaa
gaggagcagatttcaaggcttcataaaatgctggccccacatctcttgcggagagtgaag
aaagatgtcatgaaggaattacctcctaaaaaggaacttattctacgtgttgagttgagt
agcaagcagaaagaatattataaggcaattttgacccgtaattatcagatattaactcgt
cgtggtggtgctcagatttctcttatcaatgttgttatggaattgcggaaactttgttgt
catccttacatgttagaaggagtggaaccagatattgatgatgcaaaagaagcatacaaa
caactattggaaacgtcagggaagctgcaattgctggacaagatgatggtcaaacttaaa
gagcaaggacatagagtccttatatattcccaatttcagcacatgctggacttgcttgaa
gattactgtacttacaagaattggcagtatgagaggattgatggcaaggttgggggagct
gaaagacaagttcggatagatcgatttaatgccaaaaattcttcaagattttgctttctt
ctttcaactagagctgggggattggggataaaccttgcaactgctgacacggttatcata
tatgatagtgattggaatcctcatgctgatttacaagctatggctagagctcacagactc
ggacaaactaacaaggtgttaatttataggcttataacacgaggaactattgaagagagg
atgatgcagatgactaagaagaaaatggtgttagaacacctagttgtggggaggctaaag
gctcaaaatatcaaccaggaagagttggatgacatcataaggtatggatcaaaggagtta
tttgcagatgagaatgatgaagctggcaaatcccgccaaatccattatgatgctgctgct
attgatagattgctggatcgtgatcaagttggagatgaagaggccactttggatgatgag
gaagaagatggatttctgaaagcttttaaggttgcaaattttgagtatgttgatgaggct
gaagctgcagcagaggaggctgccgcccaaaaaagagcattagagaatgtgaacagttcg
gagagaacacattactgggaggagttgttaagagacaagtatcaagagcataaagttgag
gagtttaatgccttgggaaaagggaagcgtaaccggaagctgatggtttctgtggaggag
gatgaccttgctggtctggaagatgttagctctgatggtgaagatgataattatgaagca
gagcttactgatggtgattcaaattccactggaactggaactgctactgctaaaaggccc
tataagaaaaaagctcgtaatagctcagagccacttcctctgatggaaggtgaaggaaaa
gcattcagagtccttggttttaatcaaaatcagagggctgcatttgttcaaattttgatg
aggtttggggttggtgattttgattggaaggagtttacttcccgcatgaaacagaagact
tacgaagaaattaaagaaatgggaatcattttccaatattttttcctttttacttataat
tttccggcagatggtgtaccaaaagatggactacgaatccaagatgtacttgtaaggatt
gcagtcctgctcctgataagggacaaggtgaagtttgcgtcacaacatcctcaaactcca
ttgttttcagatgacatcttattacgctatccaggtttgaagggtgcgaaaatatggaag
gaggagcatgatttggttttgttgcgttccgttttaaagcatggttatggaaggtggcaa
gctattgttgatgacaaggatctgaaaattcaggaggtcatctgtcaggagttgaatctt
ccctttataaacttaccagttccaggacaagttggctctcagccacaaaatggtgcaaat
ttgacaagtgccgaagtacccaacagtcaatccagggaaaatggtggaagtgatatacca
gccgatggtgcgcaaggttctggtgatgccaggaatcaagcacaattatatcaagactcc
tccatattatatcattttagagacatgcaaagaagacaagttgagtttataaaaaagagg
gttcttcttttggaaaaagggcttaatgctgagtaccagaaagaatactttggcgatcca
aaatcaaatgacgaacttaaaagtgaacccaaggctcctaaattaggggaaactgacacc
caaatgattgatcaactaccgcaagtagaaacaatagctacagaagaaatttcgtccgct
tgtgatagtgatcctaatcgattggagttagttcgtctttacaatgagatgtgcaagata
atggaggaaaaccccatggatttagttcaaacttctttggcaagagaaccagcagagctt
catgtagggaagaatttcttacccgtagaaaccatctgcaaagacatcgacaggattcta
acacccacagaagaacaatctgctgcagatattccaatgtctaattcagagaacaaatca
gaggttatgtccaagagcgagattttgggcgccaaatcattgccaacccctacccctcat
gactccgcaaacaatgagagtaaagacatgctaatagaatctgaaactataaaagaaagc
tgctcaagcctggtaaaagatacgaatgaaattcagactcttccagacaaagagaaaagt
aatacagtaatggatgaaaccatgactgatgctcagtagaatgataacccagagaaatat
gatgccggggcattgtaa
DBGET
integrated database retrieval system
