Vigna angularis (adzuki bean): 108331720
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Entry
108331720 CDS
T04660
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108331720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
var03400
]
108331720
Enzymes [BR:
var01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108331720
DNA repair and recombination proteins [BR:
var03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
108331720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
108331720
NCBI-ProteinID:
XP_017422097
LinkDB
All DBs
Position
4:623415..639133
Genome browser
AA seq
1168 aa
AA seq
DB search
MATEQTKFSVLCSLFTWTQRSKSAAKKRSKFRKFLDAFCIDRNFFPAIRLILPNLDRERG
SYGLKESVLATSLIDALGISRDSPDALRLINWRKGGAATGATAGNFALVATEVLHRRQGT
ASGGLTIRELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAW
KKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSDIIIQNILVDRCIL
DGEMLVWDKSSKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQSLKER
HEILCKVVRPMKGRLEVLVPNAGINSHLTSGEPCWSFIAHKVDEVERFFKETIENRDEGI
VLKDHSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAER
QSPNAQPMRFISFCRVGTGLSDEELDVVITKLKPYFRKYEYPKKRPPSFYQVTNHSKERP
DVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELV
HSSNGTTQRDTEYGSKQDSKPKRMKSSTRGEKKNMSIVPSHLIQTDISSIKGGSLILSNM
MFYFANVPSSHSLESLHKIVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHY
SWVLDCYEQKKLVCLQPKYFLFLSELTKKKFREEIDEFSDSFYMDLDLGDIKQLLSNISK
SEDVSTVDHYRKKYCPKDKWSFFCGCSIYFHTATPSSKGDWHYILQLALRRFKLEVLMGG
GKVTSNLTSATHLVAFLVPGCLTDFEQILSSFTSVERKILRSKRLYIVNSQWLEDCSDSS
QRLPEDSYSLKPWGIEETTAEDCGLDLALEAHQCGDNTQHQNTSFSDKGNRKRSEQVACE
DSMAFLSREKGIKRKRGRPVGSGIKNVKPTGKQTRRARPQNVKKPTKIWEYESSDESDSR
DKQEIDTRAGSLNFYKKHSEPQENEERENVQVSRTVESSEQNKVDNKLEDLKDNDHERML
IPEIEMTDRYNDQKNEVVEKLDFSADPLQAMLFDMIPTLGTQKVEQPMNLSVREEKLAET
SNAETEPITTKKNKVSFMDAANELLKDW
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggagcaaaccaaattcagcgtgttgtgcagcctcttcacgtggacgcagcgg
agcaagtcggcggcgaagaagcgctccaagttccgcaagttcctcgacgccttctgcatt
gaccgcaacttcttccccgctattcgcctcattctccccaacctcgatcgcgagcgcggc
tcctatggcctcaaggagtccgttctcgccacctccctcatcgacgccctcggcatctcc
cgtgactcccccgatgccctccgactcatcaattggcgtaagggtggcgccgccaccggc
gctacagcaggaaatttcgccctcgtcgccaccgaggtgctgcaccgcaggcaagggacc
gcttcaggagggttgacgataagggagttgaatgagttgcttgaccggttggcttccggt
gaaaacagggctgagaaaattttggttctttctacccttatccaaaagacaaatgcacag
gaaatgaagtggattatcatgataatcctgaaagatctaaagctgggaattagtgaaaaa
agcatttttcatgagttccatcctgatgcagaagacttgtttaatgttacctgtgactta
aaactagtatgtgaaaagctaagggatcggaatcagcggcataaacggcaggatattgaa
gttgggaaagctgtccgcccccaattagctaagagagttgctaatgcaactgaagcatgg
aagaagcttcatgggaaggaagtggttgttgagtgcaaatttgatggcgaccgaattcaa
attcataaaaacggaactgagatacattttttctcaaggaactttatagatcattctgaa
tatgcacatgcaatgtcagatatcataatacaaaacattcttgtagataggtgtatcctt
gatggtgaaatgttggtgtgggacaaatcctcaaaacgctttgctgagtttggctcaaat
caggaaatagccaaggcagcaagagatggacttgatagtgacagacagttatgctatgtt
gcgtttgatatcctttattttggagatactagtgtgattcaccaatctttgaaggaaaga
catgagattttatgtaaagttgttaggccaatgaagggacggttggaagttttggtgcct
aatgctggtatcaacagtcatcttacttcaggtgaaccttgttggtcatttattgctcat
aaagttgatgaagttgagaggtttttcaaggaaaccattgaaaatagagatgagggaatt
gttttaaaagaccacagctctaaatgggaacctagtgatcgtagtggaaagtggctaaaa
ttgaagcctgaatacattcaagctggctctgatttggatgtacttatcataggtggctac
tatggttctggacgacgcggaggacaggttgctcaattcttggttggccttgcagaacgt
caatcaccaaatgcacaacctatgcggtttatatccttttgcagagttggcactggactc
tctgatgaggagcttgatgttgtaataaccaaattaaaaccatacttcagaaagtatgaa
tatccaaagaagaggccaccaagtttttatcaagtaactaatcattcaaaagaaagacct
gatgtgtgggttgatagccctgagaaatcaattattctgtctattaccagtgatatccga
actatagaatctgaggtatttgctgcaccttacagcctgagatttcctaggattgacagg
gtgagatatgacaaagcttggaacgaatgccttgatgttcaatcatttatagaactagtg
cattctagcaatggtaccacacagagggatacagaatatggcagcaaacaggacagtaaa
ccaaaaagaatgaaatcctccactaggggagaaaagaaaaacatgtccatcgttccttct
catttaattcaaactgatatttccagcattaaggggggctccttaatattgtcaaatatg
atgttctactttgctaatgtgccttcatcgcattctcttgagtccttgcacaaaatagtt
gctgagaatgggggaactttttcaatgaatttgaacaactcagtcacacattgtgttgcc
gcagacagcaagggctttaaatttgaagcagcaaagcgtcatggtgatatcattcattat
tcttgggtactagactgttatgagcaaaaaaagcttgtctgcttacagcccaagtacttc
cttttcctatctgaactgacaaagaagaagttccgagaagaaattgatgagttctcagac
tctttctacatggacctagatcttggagacatcaagcagctcttaagcaatattagtaag
tctgaagatgtcagcactgtcgatcattacaggaaaaaatactgcccaaaggataagtgg
tctttcttttgtggatgttcaatttatttccacactgcaacaccttcatcgaaaggagat
tggcattatatattacaacttgctttgaggagattcaagcttgaggttctcatgggtggt
ggaaaagttacctctaatcttacttctgcaacccatttagtggcctttcttgtgccagga
tgtctgactgactttgaacaaatactgagtagtttcacttcagtagaaaggaaaattctc
cgaagcaagaggttgtatatagttaattcccagtggttggaagattgttcagacagtagc
caaagattaccagaagactcttacagtttgaagccctggggaatagaagagacaactgct
gaagattgtggactggacttggcgttagaggctcatcagtgtggagataacacacaacac
caaaatacatctttctctgacaagggaaatcggaaaagaagtgaacaagttgcatgcgaa
gacagtatggccttcttatcccgagagaagggtatcaaaaggaaaagaggaagacctgtg
ggcagtggcataaaaaatgtaaaaccaactggcaaacaaactcgaagagcacgaccacaa
aatgtgaaaaagcctactaaaatatgggaatacgaatcatcggatgaaagcgattctcgt
gacaagcaggagattgacaccagagcaggaagtcttaacttttataagaaacattcagaa
ccccaggagaatgaggaacgggaaaatgtccaagtttctaggacagtggaaagttctgaa
caaaataaggtagacaacaagctggaggacttgaaggacaatgatcatgaaagaatgttg
attcctgaaatagaaatgactgataggtacaatgaccaaaagaatgaggtggtagagaaa
ttagacttttctgctgacccccttcaggcgatgttatttgacatgattcctactcttggc
acccaaaaagttgagcaacctatgaatcttagtgttagagaagagaaactagcagaaacc
tccaatgcagaaacagagcctataactacaaagaaaaacaaggttagcttcatggatgct
gccaatgagctgctgaaggactggtag
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