Vigna angularis (adzuki bean): 108334225
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Entry
108334225 CDS
T04660
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03013
Nucleocytoplasmic transport
var03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108334225
03015 mRNA surveillance pathway
108334225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
var03019
]
108334225
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108334225
mRNA cycle factors
P-body specific factors
108334225
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
108334225
NCBI-ProteinID:
XP_017425444
UniProt:
A0A8T0JIU5
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Position
5:complement(6861069..6867844)
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AA seq
539 aa
AA seq
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MMEERKMKVRSEREKTKVVIRHLPPSLTQSDLFHHIDSHFASRYNWFSFRPGNTSHKRQR
HSRAYIDFNSPHDVFQFAEFFDGHVFVNERGAQHKAIVEYAPSQRVPKPTTKKDGREGTI
YKDPDYLEFLKLIAKPHEHLPSAEIQLERKEAEQAGANKETPIVTPLMEYVRQKRAADTG
MQASSAVAKVSRRSRAALPGKPGSGNTKRGSEKKKYVQKDNAKSAVRRESKDKSSFIVVP
RREDLSAESSMKGISEIEALHGIEGSISGIPLSSDSGKKKILLLKGKQREIPSATEGTVK
QQNLQSGNSPISTHPKQNQRRENSGRLIRSILLNNEARQSQSTTGTQHKIQILSSENGKR
PPRPFGSRSGLNDQHSYHDTAQVNSEGDSKSALDEKFVKRDPHGLGSGEKTEKRTRSKDR
PDRGVWTPLRRSDVSHASSDYSSSSMAQPTLSNPESTEGEVKENVTSWNRGSEISASAGG
RGNPSIENGSQRNFARRGASYVVKDDGAVGISEGKHSKKSVGHSAHEKQVWVQKSSSGS
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagaaaggaagatgaaggttcggtcggaaagggagaagacgaaagtggtgatt
aggcatttgcctccttctctcactcaatccgatctcttccaccacatcgattcgcacttc
gcttcacgctacaattggttctctttcagacccggcaacaccagccacaagcgtcagagg
cattcccgagcctatatagacttcaattctcctcatgatgttttccagttcgctgagttc
ttcgatggacatgtttttgttaacgagagaggtgcccaacataaagcgattgttgagtac
gccccttcccagcgtgttccaaagccaactaccaagaaggacggacgtgaagggaccatc
tacaaagatccagactatctggagttcctcaaactcattgcaaagccacatgagcatctt
cccagtgcagagatacaattggaaagaaaagaagctgaacaagctggggctaacaaggaa
acacctattgtcactcccttgatggaatatgttcgacagaaacgtgctgctgacactggt
atgcaggcctcatcagcagtggcaaaagttagcagaagatccagagctgctttgcctggc
aagcctggctcgggcaatactaaacgaggatctgaaaagaagaagtatgttcagaaggac
aatgccaagagtgctgttcgcagagagtcaaaagacaagtcatcctttattgtggttccc
cggcgagaggatctatcagctgaatcaagtatgaaaggaatttctgaaattgaagcattg
catggcattgaaggttccatttctggaattccactgtcttctgactcgggaaagaaaaaa
atccttcttctaaaagggaaacagcgggaaattcccagtgccactgagggtacagtaaaa
cagcaaaacctacaatctggaaattctcctatttcaactcatccaaaacagaaccagaga
cgggaaaatagtggaagattgatcaggagcatacttctaaataatgaagctcgtcaaagt
cagtctactactgggacacaacataaaattcaaattttaagttcagagaatgggaagcga
ccacctcgtccttttggttcaaggtctgggttaaatgatcaacattcatatcacgacact
gcacaagttaattctgaaggggattctaagagtgctttggatgaaaaattcgtaaaaagg
gatccacatggtttgggtagtggtgagaaaacagaaaaacgtactagaagcaaggataga
cctgatcgtggtgtttggacaccccttcgtcgttctgatgtttcgcatgctagtagtgac
tactcatcatcctcaatggcacaacctactctgtcaaatcctgaatccactgaaggagaa
gtaaaagaaaatgttacttcttggaacaggggaagtgaaatctctgcttctgcaggtgga
cgaggcaatccttctattgagaatggttcccaaagaaattttgcacgtcgtggagcttcc
tatgtagtgaaggatgatggtgcagtcggtataagtgaagggaaacattcaaagaaaagt
gttgggcacagtgctcatgagaagcaagtctgggttcagaaatcttcttcagggtcttaa
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