KEGG   Vigna angularis (adzuki bean): 108335856
Entry
108335856         CDS       T04660                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
var  Vigna angularis (adzuki bean)
Pathway
var03082  ATP-dependent chromatin remodeling
var03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:var00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    108335856
   03083 Polycomb repressive complex
    108335856
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:var03036]
    108335856
Enzymes [BR:var01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     108335856
Chromosome and associated proteins [BR:var03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     108335856
   HDAC complexes
    Sin3A-HDAC complex
     108335856
    BRAF-HDAC complex
     108335856
    REST complex
     108335856
    SHIP complex
     108335856
    MiDAC complex
     108335856
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     108335856
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    108335856
  Chromatin remodeling factors
   NuRD complex
    108335856
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 108335856
NCBI-ProteinID: XP_017427570
UniProt: A0A8T0LBK6
LinkDB
Position
1:31456067..31459320
AA seq 475 aa
MGMMEEESSNSNTEGGASLPSSGSDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHN
LIVHYSLHRRMEINRPFPASPNDIRRFHSDDYVHFLSSVSPETLADTSFSRQLKRFNVGE
DCPVFDGLFDFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVL
GILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGS
GKNYAVNVPLNDGMDDENFRGLFRTVIHKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSV
KGHADCLRFIRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFG
PDYTLYVDPSNMENLNTPKDMEKIRITLLEQISRLPHTPSVPFQTTPPTLEIPEEAEEGM
DRRPKLRKWDGEDYDSDPDEGEKANSKFSSVTAHMRDIADDMEEEKPGVHPSSCC
NT seq 1428 nt   +upstreamnt  +downstreamnt
atgggaatgatggaagaggagagtagcaacagcaacacagaaggtggagcttcgcttcca
tcgtcaggttcagacgccaagaagcgaagagttacgtacttttacgaaccaactatcggc
gattactactacggtcagggccacccaatgaagccgcaccgcatccgcatggcgcacaac
cttatcgtccactactccctccatcgccgcatggagattaaccgccctttcccagcctcc
cccaacgacattcgccgctttcactccgatgactacgttcacttcctctcttccgtctct
cccgagaccctcgcggacacctccttctcgcgtcaactcaagcgcttcaacgtcggcgaa
gactgtcctgtcttcgacggcctcttcgacttctgtcaggcttccgctggtggctccatc
ggcgccgccgtcaaactcaaccgcggcgacgccgacatcgccatcaattgggccggcggc
ctccaccacgccaagaaatccgaagcctctggattctgttacgtcaacgacattgttctc
ggtatcctcgagcttctcaaagttcacaggcgagttctgtatgttgacattgatgttcac
catggtgatggggtcgaggaggccttttacaccactgatagagtgatgacagtctctttt
cacaagtttggtgattttttccctggcacaggccatatcaaagacattggggtgggctcg
ggaaagaattatgctgtcaatgttccattaaacgacggaatggatgatgaaaattttcgt
ggtctgtttcgaacggtcattcataaagtcatggaggtttatcaacctgaggcagttgtt
cttcaatgtggagctgattcattgtctggtgacaggttgggttgcttcaacttgtctgtg
aaaggtcacgcagattgccttcgattcattagatctttcaatgttccattaatggttttg
ggtggtggtggatatacaattcggaatgttgcccgctgttggtgttatgagacagcagtg
gcagtaggagttgagcctgacaataagttgccttataatgaatattatgaatattttggt
ccagattatactctctatgtcgatccaagcaacatggagaacctaaacacacccaaggat
atggaaaaaataaggatcacactgctagaacagatttcccgacttccccatactcccagt
gtaccttttcagacaacaccacctaccttagaaattccagaagaggcggaagaaggcatg
gatagaagaccaaaacttcgcaaatgggatggcgaagattatgattctgaccctgatgaa
ggtgaaaaagctaattccaagttctcaagtgtcactgcccatatgagggatattgcagat
gacatggaagaagagaagccaggagtgcatccctcatcttgttgttga

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