Vigna angularis (adzuki bean): 108338504
Help
Entry
108338504 CDS
T04660
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108338504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
var03036
]
108338504
Chromosome and associated proteins [BR:
var03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
108338504
Chromatin remodeling factors
NuRD complex
108338504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
Chromo
Helicase_C
DUF1087
HDA2-3
ResIII
CHDCT2
PHD
DEAD
C1_2
PHD_4
zf-HC5HC2H_2
zf-ANAPC11
C1_1
AT_hook
Motif
Other DBs
NCBI-GeneID:
108338504
NCBI-ProteinID:
XP_017430905
LinkDB
All DBs
Position
7:complement(34294527..34308097)
Genome browser
AA seq
1394 aa
AA seq
DB search
MSSSIQLRERSSCRPRYNFDESDEEDQVIFHTEHGKYGENVKVAGNDANVGGLVEGLPGS
SRQRKRKDDSNDSVILPRKRGRPRKNTTKCDSTDTNVNSFADRLRERSSIKKPTYVLDQL
EEDLDIFPSTHGDPTEDIVKIERSDTKENSCQACGEQGDLLTCETCTYSFHSKCIITPLK
SLFPDSWRCPECVSPLSGIEKILDCEMRPVLAAESDAQKLESKQNSVKHYLVKWKGLSYL
HCTWVPEEEFLKAFKTQPGLKIRINSFHRRIESAKNSNEDFVAIRSEWTMVDRILACRQG
HGDDKKAYLVKWKELPYDECHWELESDISAFQAEIERFNNFQSRTRRVLDASASENLQKE
FLPYESSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFE
SNVSPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGSGNARDLIREYEFYFPKNQKGFQR
KKSKQLVDETKQGRIKFDVLLTSYEMINCDLLALKPIKWECMIVDEGHRLKNKNSKLFSS
LTQLSSKHRVLLTGTPLQNNLDELFILMHFLDAGKFGSLEEFQEEFKDINREEQILRLHK
MLAPHLLRRMKKDVMTELPPKKELILRVELSSLQKEYYKAILTRNYPILTRQAGVHISLI
NVVMELRKLCCHPFMFNGLQPDLNINDEKAPLDHLLESSGKLQLLDKMMVKLKEQGHRVL
IYSQFQKMLDLLEDYCCYNNWQFERIDGKVGGAERQVKIDRFNAEDSSRFCFLLSTRAGG
LGINLTTADTVIIYDSDWNPHADLQAMARSHRHGQKKKVMIYRLITRGTIEERMIQMTKK
KMVLEHLVVGRLQAENIKQEELDDIVRYGAEELFADENDEASKSRQIHYDDDAIDRLLDR
DGVGGEDAGLDGEDEDGFLKAFKVANFEYIDEVKPAEEVAQKESKENQFSAANLKKSAYW
DGLLKKGYDQCRVEDLNALGKGKRTRTKWLGEGCSNWGDISSDGEDYEADHSEDDSNSFE
TPPTRRLQRKKLRAESPEPLPLMEGQGKSLKVLGFSQNQRADFLQILMRFGVGDYDWKEF
ASRMKHKSYEEITEYGKLFLSHIAEDITDSPTFTDGVPKEGLRIQDVLVRIALLNLISEK
VKFASENPGLDLFSADILIRYPRLKGTNFWKTEHDLVLLQAVLKHGYARWHDIIKDKDLK
IEKVICQELNIPVADVSVQVQSDSRKLYGPNITNVESSTSFNKSKQSDLCGSSDRGKQTQ
SHRKSVTWDQNKQIHRAHIEFIKKRLRLLETGLTAECQNERFSDLRANEEENKLFKDKFE
MYHYLYDFDADRLQLVYLFNEMWQTVEGSQAGFEETATEEQQRKAIRNLGQIQSISADIK
ELLRCETQERENFQ
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgagtagttcgattcaacttcgtgaaagatcgagttgcagaccccgctataactttgat
gagtcagacgaggaagatcaagttattttccatacagaacatggaaaatatggagaaaat
gtgaaagttgctggaaatgatgccaatgtgggcggcttggttgaagggcttcctggaagc
tcccgtcaaaggaagcgaaaagatgattctaacgattcagttattctccctaggaaacga
gggagacctagaaaaaacactacgaaatgtgattcaactgacactaatgttaatagtttt
gctgatcggcttcgtgaaagatcaagtataaagaagccaacttatgttcttgatcagtta
gaagaagatttagatattttccccagcacacatggggaccctacagaagacatagtcaaa
attgaaagaagtgacactaaagagaattcatgtcaagcttgtggagaacaaggagatctt
ttgacatgtgaaacatgcacctattctttccattctaagtgtataatcacaccacttaaa
agcctctttccagatagttggaggtgccctgaatgtgttagcccactcagtggtattgaa
aagatattagattgtgagatgcgtcctgtgctggctgctgaaagtgatgcacaaaagttg
gagtcgaaacaaaattctgtcaagcactatcttgttaagtggaagggactctcatatttg
cactgcacatgggttccagaagaagagtttttgaaggctttcaagactcagccaggtcta
aagatcagaataaacagcttccatcgtcgtatcgaatcagccaagaattctaacgaagat
tttgttgccattagatccgaatggactatggttgatagaatacttgcttgcagacaaggt
catggagacgataagaaggcataccttgtaaagtggaaagagctcccgtatgacgagtgc
cactgggagcttgaatcagatatttctgcttttcaagcagaaatagaaagattcaacaac
tttcagtctagaacaaggagagttttggatgcttctgcatcagaaaatctgcagaaagaa
tttcttccgtatgaaagtagccccgagtttctttcagggggttcactgcatccatatcaa
cttgaaggattgaacttcttacgattttcatggtccaagcaaacccatgttatacttgct
gatgaaatgggacttggaaaaaccattcagagcattgcgtttttagcatcgctctttgaa
agtaacgtttcaccacacttggtgattgctcccctctccacgttgagaaactgggagcgt
gaatttgcaacgtgggcacctcagatgaatgttgttatgtattttggatctggcaacgcc
cgtgatttgatacgagagtatgagttttactttcccaagaaccaaaaggggttccagagg
aagaaatctaaacagcttgttgatgaaaccaagcaaggaagaataaagtttgatgttctt
ttgacatcatatgagatgataaattgtgatttattagcactaaagcctataaagtgggag
tgcatgatagttgatgagggtcaccgtctgaaaaacaaaaattctaagttgttttcttcg
ttgacccaactttccagcaaacatcgtgtgcttttgactggaactcctcttcagaacaat
ttggatgaactttttattctgatgcacttccttgatgctggaaagtttggaagtttagag
gagtttcaggaagaatttaaggatatcaatagagaggagcagattctgagactacataaa
atgttggcaccgcatcttttgcgaaggatgaagaaagatgtgatgacagaactacctcca
aaaaaggaacttattttacgtgttgaattatccagtctgcagaaagaatactacaaggca
attctgactcggaattatccgatattaacccgccaagctggtgtacatatttctcttatc
aacgttgttatggaactgcgtaagctctgctgccatccctttatgtttaatggacttcaa
cctgatcttaatattaatgatgaaaaagctccacttgaccacttgcttgaatcctccggg
aagttgcaactgttagacaagatgatggtgaaacttaaagagcaaggtcatagagtcctt
atatattcccaatttcagaaaatgctggacttgcttgaagattactgctgttacaataat
tggcaatttgagaggatagatgggaaggttggaggagctgaaagacaagtaaagatagat
cggtttaatgctgaagattcttcaagattttgttttcttctttctacaagagctggggga
ttagggataaaccttactacagcggacacagtcattatatatgacagtgattggaatcct
catgctgatttgcaagccatggcccggtcgcaccgccatggacaaaaaaagaaggtgatg
atttataggctcataacaagaggaacaattgaagaaaggatgattcaaatgacaaagaag
aaaatggtgttagaacaccttgttgtagggaggctacaggctgaaaacattaagcaggaa
gagttagatgatatcgtaaggtatggcgcagaggagttatttgctgatgaaaatgatgag
gcaagcaagtctcgtcaaattcattatgatgacgatgctatagacagattgctggatcgt
gatggagttggaggtgaagatgctggtttggatggtgaagatgaagatggatttctgaag
gcatttaaggtggcaaatttcgaatacatagacgaagttaagccagcagaggaggtggca
caaaaagaatcaaaggagaatcaattctctgctgccaatttgaagaaatcagcttactgg
gatggcttgttgaaaaaaggatatgatcagtgtagagtcgaggatttgaatgccttaggc
aaagggaagcgaacccgcaccaaatggctgggggaaggttgtagtaattggggagatata
agctccgatggtgaagattatgaagcggatcatagtgaagatgattcaaattcatttgag
actcctcctactagaaggttgcagagaaagaaattacgcgcagagagcccagagccactt
cctttgatggaaggtcaaggaaaatcgttgaaagtacttggctttagtcaaaatcaaagg
gctgattttcttcaaattttgatgaggtttggggttggtgattatgattggaaagagttt
gcttccaggatgaaacacaagagttatgaagaaatcacggagtatggcaaactttttttg
tctcatattgcagaagatattactgattcaccaacattcacagatggcgttccaaaagaa
ggacttcgaatacaagatgtacttgtaaggattgcacttttgaatttgatatcagagaaa
gtgaagtttgcatcagaaaatcctggacttgatcttttttcagctgatatcttaatacgc
tacccacgtttgaagggtacaaatttctggaagacggagcatgatttagtgctactgcag
gccgtgttgaagcatggctatgcaaggtggcatgatattattaaggataaggatctgaag
attgagaaggtcatctgtcaggagttgaatattccagttgcagatgtatcagttcaagta
cagtctgactcacgaaagctctatggtccaaatatcacaaatgtggagtctagcacgagc
ttcaacaaatctaagcagagtgatttgtgtggttccagtgatcgtgggaagcaaacgcag
tcgcatcgtaaatccgtcacgtgggatcagaataaacaaatccatagagcacatattgag
tttatcaagaaaaggcttcgtctcttggaaacaggtctcaccgctgagtgccagaatgaa
cgctttagtgatctcagagcaaatgaggaagaaaacaaactatttaaagataaatttgaa
atgtatcattacttatatgattttgatgcagatcgtctgcaactggtgtatcttttcaat
gagatgtggcaaactgtggagggcagccaagccggttttgaagaaacggcaacagaagag
caacaacgcaaagctattaggaacttgggtcaaatccaaagcatttctgctgatatcaaa
gaacttctacgttgtgagacacaggagagagaaaattttcaataa
DBGET
integrated database retrieval system
