Kiritimatiella glycovorans: L21SP4_00165
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Entry
L21SP4_00165 CDS
T04225
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vbl
Kiritimatiella glycovorans
Pathway
vbl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vbl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L21SP4_00165 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vbl03400
]
L21SP4_00165 (mfd)
Enzymes [BR:
vbl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L21SP4_00165 (mfd)
DNA repair and recombination proteins [BR:
vbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L21SP4_00165 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
AAA_16
RecG_dom3_C
DUF1474
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKJ63449
UniProt:
A0A0G3EH37
LinkDB
All DBs
Position
complement(171877..175149)
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AA seq
1090 aa
AA seq
DB search
MKTPLQKPSLSPRDRQTLAFVFAADSPQRLAELPVTAQALIALELAETQTEPQCWVTEGP
EALARLEATVGALSGGSPENVRVFPSRESAEAGDDETEAGRAAARLRTLQACRGDEPPRI
ILTCVQALLQPVPPPGRLTARRFPVRRGDTLPPEELLGRLGEGGYRFEGEIFRRGEAARR
GGIVDVWPPGEDRPVRIEWFGDEVESIRRFDPDSQRSFDRLESVAVTPADLSIDLETEDL
VSPLEHLEAGMRWFMVRPESIREHLELYERIPEALPRLASRLEAECFGDRPPRRRIEIGP
LADTGVRPLDLRGWAPDYTAGERSGRPDLAEQGRRRVVERLFGEARDGRYVEFFFETAGS
RNRFAELYGNLPGAERVRLCDGVLSDSCRSDAAGFHIIAECDFYDYRTRRPVEARRRKAG
RRAREGRRYEEAFDIQPGDLVVHVEHGIGRYLGLFETESEEGRRESLVVEYADRARLYLP
VDQAHLLSRYVGAGRSAPRLHKLGGRRWSRERDTVEHGVRDLAARMLETQAARELEGGRA
FSADTAWQAEFEASFPYTETDDQLEAIREVKRDLESPRPMDRLICGDAGYGKTEVAMRAA
FKAVMDGAQAAVLVPTTVLAQQHYDNFSERMAAFPVRVDMLSRFRSPKEQRRIVGELADG
ALDIVIGTHRMLSKDIRFHDLGLVVIDEEQRFGVDAKEKLKRLRQHIDVLTMTATPIPRT
LYMSLTGVRDMSTIQTPPRERQAIDTEVREYDEALIREAALRELNRDGQIFYLHNRVETI
EKKRGELERLLPEARIGVAHGRMDERSLSEVMHRFSRGEIDLLLCTTIIESGLDLPRVNT
MFIERADRFGLAELYQLRGRVGRSRHRAYACLLIPRHGALFADARKRIRALRRHSGLGSG
FQLALRDLEIRGAGNLLGAKQSGHIASVGFELYCRLLRRTVARLRNEPVPPLAEVRIDLE
FIRPGPPSAGAGEENAAYIPHDYMEDETARIRFYRRITAAAGGRELRATVRELRDRFGPL
PPPVRRLARLTLIRLDAAALELVLVRVHEQKVMLQKDDGSWLRTGSRFPRLCAETPDGRL
RELGVVLRNC
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaacgccgcttcagaaaccctccctgtcgccccgggaccggcagaccctcgccttc
gtctttgccgccgattcgccgcagcggctggcggagcttccggtgacggcccaggcgctg
atcgccctggagctggccgaaacacagaccgaaccgcagtgctgggtcacggaaggcccg
gaggcgctcgcgcgactggaggcgaccgtcggcgcgctgtccggcgggtcgcccgaaaac
gtgcgggtgttcccctcccgcgaatccgcggaggccggagacgacgagacggaggcggga
cgggccgccgcgcggctccgtacgctgcaggcctgccgcggcgacgaaccgccgcggatc
atcctgacgtgcgtccaggcgctgctccagccggtgccgcctccgggacggctcacggcc
cgccggttccccgtgcggcgcggggataccctcccgccggaagagctgctcgggcgactg
ggcgagggcggctaccgtttcgagggggaaatcttccggcgcggagaggcggcgcggcgc
ggagggatcgtcgatgtctggccccccggcgaggaccggcccgtgcgtatcgagtggttc
ggcgacgaggtcgaatcgatacgccgcttcgatcccgactctcagcgatccttcgaccgg
ctggagtccgtggcggtgacccccgcggatctgagtatcgacctcgagacggaagacctc
gtctcgccgctcgaacatctcgaggccgggatgcgctggttcatggtccggccggaatcg
atccgcgaacacctcgaactctacgagcgtatccccgaggcgcttccgcgactggcctcg
cggctcgaggccgagtgcttcggcgaccgcccgccccgccggcgcatcgagatcggaccg
ctggcggacaccggggtgcggccgctcgacctgcgcggctgggcgcccgactacacggcc
ggggagcggagcggccgccccgacctggccgaacagggccggcgccgcgtggtcgagcgg
ctgttcggcgaggcgcgcgacggaagatacgtggagttcttcttcgaaaccgcgggcagc
cgcaaccgcttcgccgaactctacggcaacctccccggggcggagcgggtccggctctgc
gacggcgtactctcggacagctgccggagcgacgccgcggggttccatatcatcgccgag
tgcgatttctacgactaccgtacgcgccgccccgtcgaggcgcgccgacggaaggccggc
cggcgggcgcgcgagggtcgccgctacgaagaagccttcgacatccagcccggcgacctt
gtggtgcatgtcgaacacggcatcggccgctacctgggcctgttcgagacggagagcgaa
gaaggccggcgggaatcgctggtggtggagtacgccgaccgcgcccggctctacctcccc
gtcgatcaggcccacctgctgagccgctacgtcggcgcgggccgttccgccccgcgcctc
cacaagctcggaggtcggcgctggtcgcgcgaacgcgacaccgtggagcacggggtgcgc
gatctcgccgcccgcatgctcgagacccaggccgcgcgcgaactcgagggcggacgggcc
ttttcggccgataccgcgtggcaggccgagttcgaggcgtccttcccgtacacggagacc
gacgatcagctcgaagcaatccgggaggtcaagcgcgacctggaatcgccgcgtcccatg
gaccggctgatctgcggcgacgccggatacgggaagaccgaggtggccatgcgcgccgcg
ttcaaggccgtcatggacggcgcgcaggccgccgtgctcgtgcccaccaccgtcctggcc
cagcagcattacgacaatttcagcgagcggatggccgcgtttcccgtgcgcgtggacatg
ctcagccgtttccggagcccgaaagaacagcgccggatcgtcggcgaactggccgacggg
gcgctcgatatcgtcatcggcacccaccgcatgctctcgaaggacatccgtttccacgac
ctgggactggtggtcatcgacgaggaacagcgattcggagtcgacgccaaggaaaagctg
aagcgcctgaggcagcacatcgatgtgctcaccatgacggcaacgcccattccccgcacg
ctttacatgagtctgacgggtgtgcgggatatgagtacgatccagacgccgccgcgcgaa
cggcaggcgatcgacacggaggtgagggagtacgacgaggcgctgatccgcgaggccgcg
ctccgcgaactgaaccgcgacgggcagatcttctatctgcacaaccgggtggagaccatc
gaaaagaagcgcggggaactcgagcgcctgctaccggaagcccggatcggagtcgcgcac
gggaggatggacgagcgcagcctgtcggaggtcatgcaccgcttcagccgcggggagatc
gatctgctgctctgcacgaccatcatcgagagcggactcgatctgccccgcgtgaacacg
atgttcatcgagcgggccgaccgcttcggactcgcggaactctatcagctacggggacgg
gtggggcggtcgcgccaccgggcttacgcctgtcttctgatcccgcggcacggcgcgctg
ttcgccgacgcccgcaagcggatccgcgcactccgccgtcattcgggactcggatcgggg
tttcagctcgccctgcgcgacctcgaaatccgcggcgcgggcaacctgctcggcgcgaag
cagagcggtcacatcgcatccgtcgggttcgaactgtactgccgcctgctgcgccgcacg
gtggcccggctcaggaatgagcccgtgccgccgctcgcggaggtgcgcatcgacctcgaa
ttcatccggcccggcccgccgtccgccggtgccggggaggaaaatgcggcctatatcccc
catgactacatggaggatgaaacggcgcgcatccgtttctaccgccggattacggccgcg
gccggcgggcgcgaactgcgcgcgaccgtccgggagctgcgggaccgtttcggcccgctg
cccccgccggtccgccgcctggcccggctgacgctgatccggctcgacgctgcggcgctg
gaactcgtgctcgtgcgtgtgcatgaacagaaggtgatgctgcagaaggacgacggctcg
tggctgcggacgggatcccgattcccgcgcctgtgtgccgaaacgccggacggcagactc
agggagctgggggttgtcttgaggaactgctga
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