Variovorax boronicumulans: CKY39_20470
Help
Entry
CKY39_20470 CDS
T05068
Name
(GenBank) IclR family transcriptional regulator
KO
K20329
IclR family transcriptional regulator, positive regulator for flagellar biogenesis
Organism
vbo
Variovorax boronicumulans
Pathway
vbo02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vbo00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
CKY39_20470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vbo03000
]
CKY39_20470
Transcription factors [BR:
vbo03000
]
Prokaryotic type
Helix-turn-helix
IclR family
CKY39_20470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_IclR
IclR
MarR_2
HTH_27
MarR
HTH_24
HTH_Crp_2
HTH_36
Rrf2
TrmB
Xre-like-HTH
RP-C
Phage_CI_repr
Motif
Other DBs
NCBI-ProteinID:
ATA55326
UniProt:
A0A1E7U7V5
LinkDB
All DBs
Position
complement(4413993..4414778)
Genome browser
AA seq
261 aa
AA seq
DB search
MSEAAGSKEEVSALARGLSLLKVIGMAAAPVGNRELADTTGIPKATVSRLTATLVGAGYL
RQSQDSERFSLGPVLLDMSSRYLRNFDLRALARPHLSNLAELSGASIHMAVRDDLDMLVI
DSLRPRSALISSRIDVGSRMSIATSASGRAYIGALPGPEQSALLEQIRLETGENWHAIEP
RLIASLEEHARLGYCTSFGEWNPQIHALGFALEGPRGERYGVSCGGPAYLLPREAMLSRV
APRMLEIAQRIATEAGTLTLG
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagctgcaggcagcaaggaagaagtcagtgcgcttgccagggggttgtcgctg
ctgaaggtcatcgggatggcggcagcgcccgtcggaaaccgggagttggccgacaccacc
ggcattccgaaggccacggtgtcgcgcctcacggcgacgttggtgggggcggggtatctg
cggcagtcgcaagacagcgagcgtttcagcctggggccggtgttgctcgacatgagcagc
cgctacctgcgcaatttcgacctgagggcgctggcgcgtccccatctgagcaacctggcc
gaactgtcgggcgccagcatccacatggcggtgcgcgacgacctggacatgctggtcatc
gattcgctgcgcccgcgctcggcgctcatcagctcccgcatcgacgtcggttcgcgcatg
tctatcgccacctcggcctccggccgcgcctacatcggcgccttgcccgggcccgagcag
tcggcactgctggagcagatccgcctcgaaaccggtgagaactggcacgccatcgagccg
cgcctcatcgccagcctcgaagagcacgcccgcctgggctactgcacctccttcggcgaa
tggaacccccagatccacgccctgggcttcgcactcgaaggcccgcgcggtgaacgctac
ggtgtgagctgcggtggccccgcctacctgttgccgagggaagccatgctcagccgtgtc
gccccgcgcatgctggaaatcgcccagcgcatcgcgacagaggcaggcactctcacactg
ggctga
DBGET
integrated database retrieval system
