Verrucomicrobia bacterium S94: EGM51_03455
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Entry
EGM51_03455 CDS
T05990
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vbs
Verrucomicrobia bacterium S94
Pathway
vbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGM51_03455 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vbs03021
]
EGM51_03455 (rho)
03019 Messenger RNA biogenesis [BR:
vbs03019
]
EGM51_03455 (rho)
Transcription machinery [BR:
vbs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EGM51_03455 (rho)
Messenger RNA biogenesis [BR:
vbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EGM51_03455 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_22
NACHT
AAA_25
AAA
ResIII
Motif
Other DBs
NCBI-ProteinID:
QBG46496
UniProt:
A0A4P6PF89
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All DBs
Position
801590..803311
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AA seq
573 aa
AA seq
DB search
MNDEKDVVEEVKPAAEEPAAPAKKKASKKKASKKKAAAKKTAEKAEPKEKVEAVEKTEPV
KTTEPAEKSEPEEKTEAPKAEAPETATAEAPASKPAEAQKRPPQENDQGGDRKQNNHPRQ
NNGKQNNGKFNKKNRNKNKQRRNEEPPPNTENLPPFSLHEMQVTPINDIKNLAEEYGLQD
YAGYSKHQLIFELLKNHGRRGGPLQGRGVLEVLPDGFGFLRSPLNSYQPAPDDIYVSPSQ
IRRFGIRTGDYIEGSIRAPKEKERFFALYKIERINEDEPEHARKRVPFENLTPLFPDERL
VMEVENPKEISMRVIDLVTPVGKGQRGLIVAPPRTGKTVLMQKMANSISANNPEAKLIIL
LIDERPEEVTDMRRNTKAEVLASTFDEPPERHTQVAEIVIEMSKRLVEKGQDVVILLDSI
TRLARAYNTTSPHSGKILSGGVDSNALHKPKRFFGAARNIENGGSLSIIATALVDTGSRM
DEVIFEEFKGTGNMELHLDRECVNKRIYPAIHIEKSGTRKEELLLHPDELSRIWTLRKAL
KDVPGVEAMELLINRLKKTSSNLEFLMTLQGNQ
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgaaaaagacgtggttgaagaggttaaacccgctgcggaagagcctgcggca
ccggcaaagaaaaaagcgagcaagaagaaagcttcaaaaaagaaagcagccgcaaagaaa
acggcagaaaaggccgagccgaaagaaaaggttgaagcggtagaaaagactgagccggtg
aaaacaacggaaccggcagaaaaaagtgagccggaggaaaagaccgaagcccctaaagcc
gaagcgccggaaacggcaactgccgaagcgccggcttccaaaccggccgaagcgcagaaa
aggccgccgcaggaaaatgatcagggtggagaccggaagcagaataaccatccgcgccag
aacaatggcaaacagaataacggaaagtttaataaaaagaaccggaataaaaacaagcag
cgccgcaatgaagagccgccgccgaataccgaaaatctgccgccgttttccctgcacgaa
atgcaggtgacaccgattaacgatatcaaaaacctggccgaagaatacggcctgcaggac
tatgccggctacagtaagcatcagctgattttcgaactgctgaaaaatcacggtcgtcgt
ggagggccgttgcagggccgcggagtgctggaagtgctgcccgacggattcgggttcctt
cgctcgccgctgaacagttaccagcctgctccggatgatatctatgtctctccatcgcag
attcggcgcttcggtatccgcaccggcgattatatcgagggttccattcgcgccccgaaa
gaaaaggaacgtttctttgcgctctacaaaattgaacgcatcaatgaggacgagcccgaa
catgcgcgcaagcgggtaccttttgaaaacctgaccccgctctttccggatgaacgattg
gtcatggaagtggaaaacccgaaagagatctctatgcgggtaatcgatcttgttacgccg
gtcggtaaaggccagcgcgggctgattgtggctccgccgcgaaccggtaaaacggttctc
atgcagaaaatggccaatagtatttcggcgaataatccggaagcaaaactgatcattctg
ctgattgatgaacgtccggaggaggtgacggacatgcggcggaatactaaagccgaagtg
cttgcttccacgtttgatgagccgccggagcggcatactcaggtggctgaaattgtgatc
gaaatgtcaaagcgtcttgtggaaaaaggacaggatgttgttatcctgctcgactccatc
acccgccttgcacgtgcgtacaacaccacgtcgccgcactcagggaagattctttccggt
ggtgttgattcgaatgcgctgcataaaccgaagcgctttttcggtgcggcacggaatatt
gaaaatggcggcagtctgagcattattgccacggccctggtcgatacgggaagccgaatg
gacgaggtgatttttgaggaattcaaaggcaccggtaacatggagcttcatctggaccgc
gaatgtgtgaataagcggatttatcccgcgattcatatcgaaaaatcggggacgcgaaag
gaagagcttctgcttcatcctgatgaactttccagaatatggaccctccgtaaggccctg
aaagatgtgccgggcgtggaggccatggaactgctcatcaaccggctcaaaaaaaccagc
agcaatctggagtttctgatgactctgcagggcaatcagtaa
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