KEGG   Vibrio campbellii ATCC BAA-1116: M892_19875
Entry
M892_19875        CDS       T02837                                 
Name
(GenBank) RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
vca  Vibrio campbellii ATCC BAA-1116
Pathway
vca03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vca00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    M892_19875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vca03019]
    M892_19875
Enzymes [BR:vca01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     M892_19875
Messenger RNA biogenesis [BR:vca03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     M892_19875
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 P-loop_SecA ERCC3_RAD25_C CMS1
Other DBs
NCBI-ProteinID: AGU97245
LinkDB
Position
II:complement(438552..440135)
AA seq 527 aa
MGFTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL
ERLSNGPRVRSNHIRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRL
RKGADVLVATPGRLMDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILELLPKQRQ
NLLFSATFSNEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKD
GDWKQVLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVAT
DIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFAIER
LIQQLLPRKELEGYAPTNVLPESKLDTRPIKPKKPKKPKKPKAEGENGQTAEKKNSDGNN
KPRRRFNSDNKNDKGENKSGKAGAGKPKGNRDGQARSNGKQSGNKPNNNQSGASKPGASK
NGNGGKPSGNRKPNSGKPAGAKPSNGKPSGQRRSMRPMNPRGGVVNV
NT seq 1584 nt   +upstreamnt  +downstreamnt
atgggttttacctcgttaggtctatctgctccaatccttaaagctattcaggaaaaaggc
tacgacaccccttcgccaattcaggcacaagcaattcctgcggtattggaagggaaagac
gtaatggcagcagcacagactggtacaggtaaaacggcaggctttacgcttccgattctt
gagcgtctgtcgaacggaccacgtgtacgcagcaaccacatccgcgcattggtgctaacc
ccaacacgtgagcttgctgcgcaggtacaagaaaatgtattcatgtacagccgtcaccta
cctctaacaagcgcagtggtatttggtggtgtgaagatcaacccacaaatgcttcgccta
cgtaaaggtgcggacgtattggttgcaacaccaggtcgtctaatggacctatacaaccaa
aacgcagtgaagttcgaccaactagaaatgctagtactggacgaagcagaccgcatgcta
gatatgggcttcatccgtgacattcgtaagattctagagttacttccaaaacagcgccag
aacctattgttctcagcaacgttctcaaacgagatccgcgaccttgcaaaaggtttggtt
aacaacccggttgagatttcagtaaaccctgcaaactcaacagcacgcactgtagaacaa
tgcatctacccagcagacgtgaagaagaaagcgccaatgctggtcaaactgatcaaagac
ggtgactggaaacaagtattggtgtttaccaaaaccaagcatggcgctaaccgcttagcc
aagttcctaatcgaccaaaagatcacggcagcggcgattcacggtaacaagagccaaggc
gcacgtactaaagcactggctgactttaaatctggcgaagttcgtgtattagttgcaaca
gacattgctgcacgtggtatcgatatccctcagcttcctcaagtggttaactttgagctg
ccaaaagtggcagaagactacgttcaccgtatcggtcgtactggtcgtgctggtgaagtg
ggtaaagcgatttctctagtgtgcgcacttgaagcatcagagctgtttgcgattgaacgt
ttgatccaacaactgctgcctcgtaaagaactggaaggctacgcaccaacgaacgtattg
ccagagtcgaagcttgatactcgccctatcaagccaaagaaaccgaaaaagcctaagaag
ccaaaagcagaaggtgaaaacggtcaaacagctgaaaagaaaaacagcgacggtaacaac
aaaccaaggcgtcgtttcaacagtgacaacaaaaacgataaaggcgaaaacaaatcaggc
aaagccggtgctggtaagccaaaaggcaaccgtgacggtcaagctcgctcaaacggcaag
caaagcggtaacaagccgaataacaaccagtctggggcgagcaaaccgggcgcaagcaaa
aacggtaacggtggcaagccatcaggtaaccgcaagcctaacagcggcaaacctgcaggc
gcaaagccttcaaacggtaagccatcaggacaacgtcgcagtatgcgccccatgaaccca
cggggcggtgttgttaatgtttga

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