Venturia canescens: 122415314
Help
Entry
122415314 CDS
T09386
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
vcan
Venturia canescens
Pathway
vcan03022
Basal transcription factors
vcan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122415314
09124 Replication and repair
03420 Nucleotide excision repair
122415314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vcan03021
]
122415314
03400 DNA repair and recombination proteins [BR:
vcan03400
]
122415314
Transcription machinery [BR:
vcan03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122415314
DNA repair and recombination proteins [BR:
vcan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122415314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
122415314
NCBI-ProteinID:
XP_043283266
EnsemblRapid:
LOC122415314
LinkDB
All DBs
Position
8:complement(13709423..13712242)
Genome browser
AA seq
467 aa
AA seq
DB search
MSSSQTGQNLLRPTGLKCKDLHEYLKSRPPDVLNRLYHNPPICLAVFRELPVIARHYVMR
LLFVEQPVPQAVIASWCSKLHAEEHQHVVQALNELSVWKEASIPGGLPGWILNSTFKKNL
KIVLLGGGKPWTMSNQLEIDSKPRDVAFLDSYAIERWECVLHYMVGSQQQEGISADAVRI
LLHAGLMKRDEEDGSPVITQAGFQFLLLDTASQVWYFILQYLDTIEARGLDLVECLTFLF
QLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLVYQRKRKAGRFYPTRLALNIATGQNKPL
ARDMEKEGYIIVETNYRVYAYSNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALRS
GITAAQIIGYLKQHAHGKMVEAGPPTLPPTIVDQIKLWENERNRLTFSEGVLYSGFNSQA
DFEVLRNHALTSGVLILQNDRKRTMVVTKAGHDDVKKFYKRYSKGSM
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagttcgcaaacaggacaaaatttgttgagaccaacgggcttgaagtgcaaagat
ttgcacgaatatctgaaatcgcgaccacccgatgtcttgaaccgactttatcataatccg
ccaatatgtttagcagtttttcgagaattgccagttatcgcgagacattatgttatgagg
ttactttttgtggaacaaccagtccctcaggctgtaattgcatcatggtgctcgaaatta
cacgcagaggaacatcaacacgttgttcaagctctaaatgaattaagcgtttggaaagaa
gcctccataccaggaggcttaccaggctggatattaaattcgacttttaagaaaaacctc
aaaatcgttcttcttggtggtggtaaaccttggaccatgtctaatcaattggaaatcgat
agtaaacccagagacgtcgcttttttggattcttatgccattgaaagatgggaatgcgta
ctgcattacatggtcggttcacagcagcaagaaggaatttcggctgatgctgtaagaata
ttattacacgccggtctcatgaaacgcgacgaagaagatggaagtccagtgataactcaa
gctggattccagtttttacttttggatacagcgtcccaagtgtggtattttatcctacaa
tatttggataccatagaagctagaggtctggacttggtagaatgtctcacttttcttttc
caattgaatttttctactcttggcaaagattacagcacagaaggaatgtccgaaggtctt
ttaacattcttgcaacatcttagagaatttggattagtatatcaacgaaaacgaaaagca
ggaaggttttacccaacgcgtttggcactcaacattgctactggacagaacaaacctttg
gcaagagacatggaaaaggaaggctacatcattgtcgagacaaactatcgggtttatgca
tacagcaactcaaatcttcaagttgctctgctgggacttttttgtgagatgctgtaccga
tttccgaatttggtcgtttcgatactaacaagagattcggtgagacaagctttgaggagt
ggaataacagcagcacaaataattggttatttgaagcaacatgcgcatggaaagatggtt
gaagcaggtccaccgactttgccaccaaccattgttgatcagataaaattgtgggaaaat
gaacgcaatcgtttaaccttcagtgaaggtgttctctacagtggctttaattcccaggcg
gatttcgaagtattacgaaatcacgctctcacatctggcgttttgattttgcagaatgat
cgaaaacgaacgatggtcgtaacgaaagctggtcacgacgatgtaaaaaagttttacaaa
cgttattcaaagggttcgatgtaa
DBGET
integrated database retrieval system
