Venturia canescens: 122416206
Help
Entry
122416206 CDS
T09386
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
vcan
Venturia canescens
Pathway
vcan03013
Nucleocytoplasmic transport
vcan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcan00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122416206
03015 mRNA surveillance pathway
122416206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcan03019
]
122416206
Enzymes [BR:
vcan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122416206
5.6.2.5 RNA 5'-3' helicase
122416206
Messenger RNA biogenesis [BR:
vcan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122416206
mRNA cycle factors
Common to processing body (P body) and stress granule
122416206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
Helicase_RecD
DEAD
UvrD-helicase
ATPase
AAA_16
nSTAND3
SRP54
AAA_22
AAA_7
AAA_10
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
122416206
NCBI-ProteinID:
XP_043284885
EnsemblRapid:
LOC122416206
LinkDB
All DBs
Position
9:complement(15671635..15679868)
Genome browser
AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSPSQTQASQHDAAQSQQSQ
PVQVNGTNGSSALDLKISGVGQSFAELQFEEEEEEAYYHRDLPEHACKYCGIHEASCVVM
CNICRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKASQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYNGELHKPWFE
LGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQSALRKFAEDGTS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTEFQKLQQLKDETGELSSVDEKRYRLLKRAAEKELLEAADVICCT
CVGAGDPRLHKLAFHSILIDESMQATEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPATDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNASNPGSHFMTTSMYDAREALIPGSIYDRSGSQLNGNQQHNPYYQRNLPLDMFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGVATTK
TKMTRGLGKLSQSEQSTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtatggacctagcagtcaaactctgaccttcctcgacactgaggaa
accgatctcatcggtgcggatactcaaggcagcgaattcgacttcaccgattttacttta
ccttctcccagccaaactcaggcttctcaacacgatgccgcacagagtcaacaaagtcaa
cctgttcaggtaaatggtacaaacggtagctcagccttggacctgaaaatatcaggggtg
gggcagagttttgcagagctccagtttgaggaagaggaagaagaagcttattatcatcgt
gatttgccggaacatgcgtgtaaatactgtggcatacacgaggcctcgtgcgtcgtcatg
tgcaacatttgccgtaaatggttttgcaacggacgagggaatacatcaggttcccatatt
atcaatcatctggtgcgagccaagcacaaggaggtcactcttcacagggatggacctctg
ggagaaacagtattggaatgttattcctgcgcggtgagaaacgtattcgttcttggtttc
attcctgcaaaagctgactccgttgttgtgttattgtgtcgacaaccttgcgcagcacag
agttctttgaaggatatgaactgggatcaagaacagtggaaacccttgatagaagatcgc
agttttctcgcctggctggtgaagattccatcggagcaagaacagctacgagcgcgtcaa
atatcagctcagcagataaataaactggaggaattgtggcgtgacaatgtggatgcgacg
ttccaagatctcgagaagcctggagtcgatgaagaacctcaacaagttttgttgcgatac
gaggatggttatcagtaccaaaacatatttggtcctctcgttaaactcgaggccgattac
gacaaacgtcttaaagcttcgcagacccaagaaaacatcgaagtacgttgggacgttgga
ttgaacaagaaaacaatcgcatatttcatgctcgctaaaactgacggagatatgaaattg
atgcacggtgacgaattgagacttcgttacaatggcgaactgcacaaaccctggtttgaa
cttggacatgtcatcaaaatcccggacaactatggcgaggaagtcggcatcgaattgaaa
aacaattcaggcgccccgaccgaatgtgttagcaatttcgtcgttgactttatttggaag
agcaccagctttgatcggatgcaatcagcgttgcgaaaatttgccgaagacggtacttcg
gtttctgcctatatctatcatcgcctgttgggtcacgaagtggaggaagtgttgttccgt
tgtcatttgccaaagcactttagcgcgccgaatttaccagatttgaacagatcgcaggta
tacgcggtgaagcatgcggttcaacggccattgtcattgatccagggtccaccgggaacg
ggaaaaacggtgacgagtgcaacgatagtatatcagttggtaaagcaaaacggtggtccg
gtattggtatgcgcgccgtcgaacacggcggtggatcagctaacggagaagattcacaag
tcgaatttgaaggtagttcgtctttgcgcaaagtctcgtgaggcgatagattcgccggtg
agttttttggccttgcacaatcagataaagaacatggagacgaacacagaatttcaaaaa
ttgcaacaattgaaagatgaaaccggggaattgtcgagcgttgacgaaaagcgttatcga
ttgttaaaaagagccgcggagaaagaattgctcgaagctgcggacgtgatatgttgcact
tgcgttggtgcgggcgatccacgtctgcacaaattggccttccactcgattctgatagac
gaaagtatgcaagcgaccgagcccgaatgcatggtgccagttgtattgggcgcgagacaa
ttgattctcgtcggagatcattgccaactcggacctgtggtaatgtgcaaaaaagcggct
cgtgctggtctctctcaatcgctcttcgaaaggctcgtagtccttggaattcgcccgttt
cgtctcgaagtccagtaccgcatgcatcccgatctctcgcgcttcccatcgaactttttc
tacgagggatcgttgcaaaacggagtttgtgcggacgagagaaaactgttgaagatcgat
tttccatggccggctaccgacaagccaatgttcttctacgtgactcagggacaagaagag
atcgctggaagtggcacgtcttatctaaaccgcacagaagcctcgaacgtggagaaaata
acaacaagatttttgcgttgcggcgttaaacccgaacaaattggtgtgataacgccttac
gaaggccaacgcgcttatctcgttcaatatatgcagtaccagggctccttacactcaaaa
ctatatcaagaaatcgaagtggccagcgtggacgctttccagggacgcgaaaaagacata
ataataatgtcctgtgtccgttcgaacgagcatcaaggaatcggttttctaaacgatccg
cgacgccttaacgtcgctctgacacgtgcgaaatacggtattattatcgttggtaatcca
aaagtactttcgaaacaaccactctggaatcatctgttgagtttctacaaagagcaaaaa
gttctggtcgaggggcctctcaataatctcaaggagtcgatgatacaatttgcgaaaccg
aaaaaattggtcaacgcttcaaatcctggttctcacttcatgacgacgtcgatgtacgac
gcccgcgaagctttgattccaggctcaatttacgatcgttccggttcccaattgaacggt
aatcaacagcacaatccttattatcaaagaaatttgccgctcgatatgttcagtcgtacg
cacgatacgatcagctacataagtccagaaagggctcaagccgctatgaataacgttccg
gttcccgttggtatgttcatgaacatggctcatgtaccgcccagattttataatcagcat
caacaagcattgcaggcgcgacagaatcagagaaatcgccgaggggtcgcaacgaccaaa
accaaaatgacacgtggccttggaaaattgagccagagcgaacagagcactcaaccttac
agtcaacctggcttaccactgactcagggcaccacacaaggcatgtctcaacctggtttc
agtctttctcagcctggtttgagccaggcagaattgtctcaagactcgtttgccgttggt
gaattccaatcacaaatggacggtcttttgtcccaagactcgacttaccagggcgatcgt
agtggtttctatcagagcggacagtcacaagccggtggacaattttcccagccttactga
DBGET
integrated database retrieval system
