Varibaculum cambriense: CYK25_000390
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Entry
CYK25_000390 CDS
T09090
Name
(GenBank) VaFE repeat-containing surface-anchored protein
Organism
vcb
Varibaculum cambriense
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TQ
DUF5979
Molydop_binding
DUF3224
Motif
Other DBs
NCBI-ProteinID:
WIK88728
LinkDB
All DBs
Position
82266..92018
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AA seq
3250 aa
AA seq
DB search
MMINSQTAKLLRRWIVAGLAAALALAWTITTLVAPSQASTDENVTVDAVSGTPTSLNLKY
PDSDNAGRFPYPGAYTAVESWRNNNPQVYQEWQQRINDSYGGSADTPVEYRYMTVEEPFR
DVQGQWRYKWVDPLGYFLPNAGPGKNQVITESACIDPNVGQDPIYTTYVKNLSKNAVQTR
ITLDPQKAIEYQKKAGKNYSPEQQGMFKALAYVNTGGDPRLNDFVNYDDATLKQKIAEYP
AIGDFYNANMALIEAQRDAVAKIKSLKPNQKYQVLQGLAWAINRGNTDWLAIGDNCTYID
QYKTANCQVNKELTQLAHDVYADLKVMASSELKMYEAYAKYKEQFKNKRDEYEKALKKWQ
EETQRQVEANEKLYQTNKELLSSIKIYVDKTDDGKKLAIKLHGSSEALALLQQSKTNIDV
NLTVNGKTVPVNGVSVAAAASPEGIPVPVDSTGLGCDQKLAGTVTASFSGEIEISGTYIF
DGRNKLQRQVVLQKYKVAVSGNTSHDFSFAGTCPVAPERKIGTTLEGSDGAKVIDTAGKK
RTEKVTLVDKVKFENLKGGQNYVIKGELVDGNGNGVGVTGTSETFDPKASGATDNGNGYY
SGTINMTFQVPVQTIRDNQKLVAFETLYQGDRPETGTKVTEHKDKNDENQTVTEKPRIGT
SAEAQGESSDDGKVAVPEEGKDVLIKDTVTWNKLKPGTYTLSGQLMKKVGNQVVPVAGTK
AAKNFTVNTGQLEGTQELTFTLPAKQIEAGASYVVYEKVFKGANNTAGILVASHEDPNDK
GQTVTVNPKQHKLPTIKTVAWVRDDGNSLISTVEADGKDFKVKDKIIYNDLKPGTYTAFA
TLVNKDNPKEIIASGRQVFTNGAENGSTLVELAVAGSKVKADGKYVVFERIYQGEQTSEP
SGEPYAKHQEIGDKSQTITVAPKNPVPAEFKIVKKTVGDNANTDRVFDFDVACDGYTGTV
SVVVRKGQTQGETKVSNSALTSGMSCQVSEQAVQDDQNTVKVQFSGTDTNSDGTVAKFNL
TENNAKTVVVTATNTFTPKQAKFTVRKNVEAAGVTHFSVPNSFDFSYKCDGDAYWKAIPT
LKAGETSAAIKVKPGVECQVKENSGTPENLDRTLEWLGAQSQAGGTATFRTDANNTVALV
ATNTYTEKTGQLEISKQVVDGTAGAGTIPGTFEMKYICATGQKAESVTKKLTSISVNKGG
SATITGIPVGSQCAVYEDTTGINVPNTTLTTTFNGKAPQQVTIGGQVLHNAALSNPIKAG
ESQKATINVENKYVNQKAGGFEVEKLVAGVTNPGTVLKDVAFDFGYSCEIPGNAHAVKGS
FKLKHGETFTSADPANPQLNNLPVNTVCKVWEETPKSSANADYVGSELRASATNGAEVTG
TDGKLELTIKLNKAAAKAKILATNQYSQQLGGFTLKKEVQGSADQALDIQSYKFKLTYMD
GTNTHVKEQTIPAGGGSYSFWGVPVGSQVQVEELGAVDSQGNLIPVNELSTAKVKHSISW
NGTQDDSSTASANIFTINKAMTEAQWKESGKQANVVVKATNTYKAIEQKGTFSVQKTAVK
VAGESKDKVKNLPTSYNFTYDCSDGIHGNIPNVKPGGEPVVAPAQFRAGTVCTLTEQQVL
PKGTNAQTVSWTVDGKGKGVGSAAGTSATVTIGSDAKHPVAVQAANEYQTPDEPKIATEL
KGEGRNGNIDLVEGADHTYTLTDKISYWNLEVGKTYKFSGELVVPNADKTDATRTGIKAE
KTVTITTPSGVVELPFKLTQADVAKYSTLVAFEKLDLQVEGGFEPVTKHEDPKDENQTKQ
VNPWIATVLTDEGGNKQIDTTGKADSELVTLVDTVKYRNLEAGKTYHLTGKLVDGSGKPI
GVSSTSKAFTVPGEAGTLQSGEAKMTFQVTVGQIRQNAKLVAFEYLHPGQPNTPGDETVI
TKHEDPNDENQTVNEGPRAATTAQSSTGTKVFDAKTPAKVLDRVTWSKLPAGNYVLVGTL
MDKGTKQAVPNVNAEIVKFTVSNGELKGLQEMTFTVPAEQAKSNAQFVAFEKIYRQGDVD
ENGNVKDGKKPVVEHSDLNDKAQTVTTGEEPQSPVTPTLTLQKVVKSEGLEVPSTKQFAF
TLKCSSPIDGKSKQQTYQVTAGSKISLPYVKGANCTLTEDREGAKVAGIAPSQVTFSADS
EKIGLITSDNSASFKMPAEETTEVNVVLTATNTYPAPEKPTVATSAKDANGTKGMYGQSK
QANQVYAGTSAKIVDEVSWANLLPGDYVLIGKLMDKETGKAVTSYTSTPAPFTVKAGEKN
GKLDNTFTVSGDSLKAGSHYVVYEYIYRAGDVNGATPNNGAKPVVEHAVITDADQTVEAI
TPPTPPAAKVKIMKKVVASGMEVSNNRAYIFTLSCRDKDGNAAGDKTLLVRPDKATEVTG
LRSGYVCSINEDLDAAIEQQVTPSISLTSGTNGFSVQQDSTAGAAHFTVPAATEQVPEVL
VNVTNTYNKMGKPELQTNAVTDNGSSSVQAGTATTVTDKVTWKNLPEGKYLLTGKLMHIT
DDNAAPVAGVTNEPVVLEITKDNSLAGSTTMKFNVPAGAISQAGKYVVYEYLYNYEDTDG
HKPKPNTSTVVSHNDPSDDAQTVNVTEAPSVSTTATTDGANEKEIQKGKAAVVTDTVNWK
NLPAGNYQALSELVDSKGNPVAGATTKAVPFTVNNGEEAGSVKTKIQLPATATSTAGAKF
VVFERIYRASDVDSQTGRPAQNAQPVVSELDLNAINQTVRVVESPKGPPAITFTKVTEKA
LDGQVPDKDRKFQFTISCDKNFGGAYSFEMPAGVSAALPADKQLQAGTVCTLTEMLTDEA
NADGILPDAISFSSSNKAMAVSKINNQTAQFTVPDVDTKVVPEIQVTIKNIYSKDFPELG
TIARDNADQDKVLDLKKGENAQVQDVATWKNLAPGKYTMMGTLMDKLTGKPVVGANTPAV
DFQVKKGEKTGTIYALFTVPGDKVSTKASWVVFEKVYKASDVKDGKVVSKATPVVDHSNL
EDADQTVQVTPPPASQEQKTREIATVAKNGTTFNDGTKDPNLGKPVLTPGQDAVIVDTVK
WKNLEPGEYTITGSLMDKSTNAPLTYLDKDGNQKDGATAERGSFAVKEGQTEGETKVYFT
VKGEAIQANRQYVVFEDLYKTADIDEHGQPTPGAEKVAQHHDINDAAQTLSGDKPKPGTP
PETPKTPNTPGTTPPGPTPRTPSGFRGVVSTVLAKTGSTTGIMAMTGVLAMVAGIGLVMI
RRYQREELED
NT seq
9753 nt
NT seq
+upstream
nt +downstream
nt
atgatgattaacagtcaaactgcgaagttgttgcggcgttggatcgtcgctggattagct
gccgcattagccctggcatggactatcaccaccttggtagccccctcccaggcctccacg
gatgaaaatgtcaccgtagatgcagtaagcggtacccctacctctctaaatcttaaatac
ccagattctgacaatgccggacggttcccatacccaggtgcctacacggctgttgagagt
tggcgcaataataaccctcaggtctaccaagaatggcagcaacgaattaatgactcgtat
ggaggctcggcagataccccggttgagtatcgctatatgaccgttgaagaaccctttaga
gatgttcagggacagtggcgttacaagtgggtggatccactgggttacttcctgcccaat
gcaggtcccggtaagaatcaggtaattactgaatcggcctgtattgatcccaatgtaggg
caagatcctatttacactacctatgttaagaatctatcgaagaacgcagttcagacaaga
attactttagatccccaaaaagcaattgagtaccaaaagaaggccgggaaaaattactcg
cctgagcagcagggaatgtttaaggctcttgcctatgtgaataccggcggtgatccccgc
ctaaatgactttgtcaattacgacgacgcgaccttgaaacagaagattgctgaatatccc
gccattggagacttctataacgccaatatggctctgatcgaagcgcagcgtgatgccgta
gccaagatcaagtctttgaagcctaatcagaaatatcaagtcttgcaggggctggcctgg
gccatcaatcgtggtaatactgactggttagctatcggtgataactgcacctatattgat
cagtataagactgcaaactgccaggtaaacaaagagcttacccaactggcgcacgatgtc
tatgctgacctgaaggttatggcttcctctgagctgaagatgtacgaggcttacgccaag
tacaaggagcagtttaagaataagagagatgagtacgaaaaagctctcaagaagtggcaa
gaggaaactcagcgtcaggtagaagccaatgaaaagctctaccagactaataaagaactt
ctgtcctctataaaaatttacgttgataaaaccgatgacggtaaaaagctagctatcaag
ctacatggttcctccgaagctttggcgttgctacaacagagcaagaccaacattgacgtt
aacctcaccgtgaacggaaagaccgttccggtgaacggagtgtcagtggctgctgccgcc
tcaccagaaggtattccggtcccggttgattccacaggtctcggttgtgaccagaaacta
gccggtacggttaccgcatccttcagtggggaaatcgagatttccggtacctatattttc
gatggtcggaacaaactgcagcgccaggtagttttacagaaatacaaggtagctgtcagc
ggtaatactagccatgatttcagttttgcaggtacctgcccggtggctccggagcgtaag
atcggcaccactttggaaggtagcgatggagccaaggtaatcgataccgccggtaagaaa
cgcactgaaaaagtcaccttggttgacaaggttaagttcgagaaccttaagggcggacaa
aactacgtcattaaaggtgaattggtagacggtaacggcaacggtgttggcgtgaccggt
accagcgaaacttttgatccgaaagcctcaggagctactgataatggcaacggatactat
tccggcaccatcaatatgactttccaggtgccggtgcagacgattcgggacaaccagaaa
ctggtagcctttgaaaccctctaccagggtgataggccagagactggaaccaaagttacc
gagcacaaagacaagaatgacgagaatcagaccgtaactgagaaaccacgcatcggtacc
agcgccgaggcgcaaggcgaatcgtccgatgacggtaaggtagcggtacccgaagaaggt
aaagacgtcctcatcaaggacacggtcacctggaacaagctgaagcccggaacctacacc
cttagcggacagctaatgaagaaagtaggcaaccaggtagtgccagtagcaggcaccaaa
gcagccaaaaacttcacggtaaatactggccagctagaaggcacccaggaactgacgttc
accctgcccgccaagcaaatcgaagctggcgcgtcctatgtggtgtacgaaaaagtattc
aaaggtgccaacaacactgctggaatcctcgtggcatcccacgaagatcccaacgataag
ggacagaccgtaaccgtcaatcccaagcaacacaagctacccaccattaagaccgtggcc
tgggtgcgtgacgacggaaactcgttaatcagcacggtggaagccgatggcaaagacttc
aaagtcaaagacaagattatttacaatgatctgaagcccggcacctacaccgcctttgcc
accttggttaataaagataaccccaaggaaataattgccagtggacggcaagtatttacc
aacggcgccgaaaatggctccaccctggtagagctcgcagttgctggctccaaggtaaag
gccgatggcaaatacgtcgtgtttgaacgcatctaccaaggcgagcaaaccagtgagccc
agcggcgaaccttacgccaaacaccaagaaattggcgataaatcgcagacgatcacggta
gcgcccaagaatccggtgcctgccgaattcaagattgttaagaagaccgtaggcgataac
gccaacactgatcgggtattcgacttcgacgtagcctgtgatgggtacacgggcaccgtt
tctgtggtagtgcgtaaaggccaaacccagggtgaaaccaaggtttccaactccgcgcta
accagcggcatgagctgccaggtaagtgaacaggcagtacaggatgaccagaatacggtg
aaagtgcagttctcgggtaccgacaccaacagcgacggtaccgtagcgaagttcaacctt
actgagaacaacgccaagaccgtggtggtcactgcgaccaacaccttcactcctaagcag
gcgaagttcaccgttcgtaagaacgtagaagcagccggagtaacccacttcagcgtgccg
aactccttcgacttctcctacaagtgcgatggcgatgcctactggaaggccatacccact
ttgaaagccggagaaacttccgcggcaatcaaagtaaagcccggtgtggaatgccaggtg
aaagaaaatagcggcactccggagaatctggatcggaccctggaatggcttggtgcacag
agccaggcaggtggcaccgctactttccgtaccgatgctaataacacggtggcactggta
gccaccaacacctacaccgagaagaccgggcaactggaaatctctaagcaggtagtagat
ggaaccgccggcgcaggcaccattccgggcacgttcgaaatgaaatacatctgtgccacc
ggacagaaagccgaaagcgtaaccaagaagcttacctcgattagcgtaaacaaaggtgga
agcgcaaccatcactggtattccagttggttcccagtgtgcagtctacgaagataccacc
ggtatcaacgtaccgaacaccactttgaccaccacgtttaacggtaaagcgcctcagcaa
gtaactatcgggggacaggtactgcacaacgcggctctatccaacccgattaaagccggc
gaaagccaaaaagctaccatcaacgtagaaaacaaatacgtaaaccagaaagctggtggc
ttcgaggtagagaagctagtcgccggagtaacaaaccccggcaccgtcctcaaagacgta
gccttcgatttcggatactcctgtgagattcctggcaatgcacatgcggttaaaggcagc
ttcaagctcaagcatggtgaaaccttcaccagcgctgaccctgccaacccgcagctaaat
aacctgcccgtaaacaccgtatgtaaagtatgggaagaaacccccaagtccagtgcaaac
gctgactatgtaggttctgagctacgggcaagtgccaccaacggtgcggaagtaaccgga
accgacgggaaactagaactgaccattaagctgaataaagctgcagcaaaagccaagatt
ttggctactaaccagtacagccagcagctcggtgggttcaccctgaagaaagaagttcaa
ggcagcgctgaccaggctctggatatccagtcatacaagttcaagctgacctacatggac
ggcaccaacacccacgtgaaggagcaaaccattcctgcgggtggtggttcctactccttc
tggggagtaccggtcggcagtcaagttcaggtggaagagctcggtgctgttgacagccag
ggtaacttgattccggtaaacgaattgtccactgctaaagtgaagcactcgattagctgg
aacggcacccaagatgattcctctaccgcgtccgctaacatcttcaccatcaacaaagcg
atgactgaagcacagtggaaagaaagcggcaagcaggcgaacgtggtagtgaaagctacc
aacacctacaaggcgatcgaacaaaagggtaccttctcggtacagaagaccgcggtgaaa
gtagccggcgaaagcaaggacaaggttaagaacctgcctaccagctacaacttcacctat
gactgctccgacggcatccacggtaatatccccaacgtaaaaccgggcggcgagccagta
gtagcccccgcgcagttccgggcgggcaccgtctgtaccctaactgagcagcaagtgcta
cctaaaggcaccaatgcccagaccgtaagctggacagttgacggtaaaggcaaaggcgta
ggttcggccgctggaaccagcgcgactgtaaccatcggttcagatgcgaagcatccggta
gccgtgcaggctgccaacgaataccagacccccgatgagccgaagattgcaaccgagctg
aaaggcgagggtcgcaatggcaacattgacctggttgagggcgcggatcatacctacacc
ctgaccgacaagatcagctactggaacctggaggttggcaagacctacaagttctccggt
gagctggtagtacctaacgcggataagaccgatgccacccgcaccggaatcaaagccgaa
aagacagtcaccattaccacgccaagcggagtagtggaactgcccttcaagctgacccaa
gcagatgtagccaagtactcgacgctagtcgcgttcgaaaagctagacctgcaggtcgaa
ggcggatttgaaccggtcactaagcacgaagatcccaaggacgagaaccagaccaagcag
gtcaatccctggattgcgacggtactaaccgacgagggtggaaacaagcagatcgatact
accggtaaagccgatagcgagctggtaaccctggttgacaccgtgaaataccggaactta
gaagctgggaagacctaccacttgaccgggaaactggtcgatggatctggaaagccgatt
ggggtcagctctacctccaaggcattcactgttcctggtgaggctggaactctccagtcc
ggtgaagccaagatgaccttccaggtcaccgtgggacagattcgtcagaacgcgaaactg
gtggccttcgaatacctccacccggggcagccgaacacccccggtgacgaaacagtgatc
accaagcacgaagacccgaatgatgaaaatcagacggtaaacgaagggccgcgggcggca
accactgctcaaagctcgacgggtaccaaggtattcgacgctaagaccccggccaaagtg
cttgaccgcgtaacttggtcgaagctacctgccggaaactacgtgctggttggcaccttg
atggataagggaaccaaacaggcggtaccgaatgtcaatgcggaaatcgtgaagttcacc
gtgagcaacggcgagctaaagggtctccaagaaatgacgttcacggtacccgcggaacag
gccaaatccaacgcccagttcgtggcgttcgagaagatttaccgtcagggcgatgtcgat
gaaaacggcaacgttaaggacggaaagaaaccagttgttgaacactctgatctcaatgac
aaggcacaaaccgtaaccaccggtgaagaaccgcaaagtccggtaactccgacgctaact
ttgcagaaagttgttaagagcgaaggactggaggttccctccaccaagcagttcgccttc
accctgaagtgctccagcccgattgacggaaaatccaagcagcagacctaccaggttact
gccggatccaagatctcgctgccctacgtcaagggagccaactgcacccttactgaggat
cgcgagggagccaaggtagcgggcattgccccctcccaggtaaccttcagcgcagattcc
gaaaagatcggtctgatcacttctgataactcggcctccttcaagatgccggcagaagag
acgacggaagtaaacgtggtccttactgcgaccaacacctacccggcaccggaaaagccc
actgtggcgacctccgccaaagatgctaacggcaccaagggtatgtatggccaaagcaag
caggccaaccaggtttacgctggtacctccgccaagatcgtggatgaggtatcctgggcg
aacctgctgcctggtgactacgtcctcatcggcaagctgatggacaaagaaaccggtaaa
gcggtaacttcctacacttccaccccggcacccttcacggtgaaagcgggcgaaaagaac
gggaagctggataacaccttcaccgtcagcggtgactctctcaaggctggtagccattac
gtggtttacgaatacatctatcgcgcaggtgatgtaaacggcgcaaccccgaacaatggc
gctaagccggtcgtggaacacgccgtaatcactgacgcggatcagacggtagaggcgatt
acgcctccgactccgccggccgcgaaagtgaagatcatgaagaaggtagtggcctcgggt
atggaggtatccaacaaccgtgcctacatcttcaccttgagctgccgtgataaggacggc
aatgccgcaggcgataagaccctgctggtacgtccggacaaggctaccgaggtaaccggt
ttgcgcagcggctacgtgtgctccattaacgaggatctggatgccgccattgagcagcag
gtaaccccctcgatctcgctgaccagcggaaccaatgggttcagcgtgcagcaagactcc
acggcgggtgcagcgcacttcaccgtaccggcggccaccgaacaggtgccggaagtactg
gtgaacgtgaccaacacctacaacaagatgggcaaaccggaactgcagaccaacgcggta
accgataacggtagctccagcgtccaggcaggaactgccaccaccgtaaccgacaaggtc
acctggaagaacctgccggaaggtaaatacctgctcaccggtaaactaatgcacattacg
gatgacaacgctgctccggtagcgggagttaccaatgaacccgtggtactggaaatcacc
aaggataactccttggcaggctccaccaccatgaagttcaatgtgccagccggggcaatc
agccaggccggaaagtacgtagtgtacgaatacctctacaactacgaagatactgacgga
cacaagcccaagccgaacacctccactgtggtttcccacaacgaccccagcgatgatgcg
cagaccgtgaacgttaccgaggcaccctcggtgagcaccactgccaccaccgatggagca
aatgaaaaggaaatccagaagggtaaagctgcggtagtaaccgataccgtcaactggaag
aacctgcccgccggtaactaccaggcgctcagtgagctggttgacagcaagggtaacccg
gtcgccggggccaccactaaggcggttcccttcaccgtgaataacggcgaagaagcaggc
agcgttaagactaagatccaactaccggccaccgctacctcgactgcaggcgcaaagttc
gtagtattcgagcggatctaccgcgccagtgatgttgactcccagacgggacggccagct
caaaatgcgcaaccggtagtatccgaactggatctgaatgccatcaaccagacggtgcgg
gtagttgaaagtccgaagggaccgcctgccattaccttcaccaaggtaaccgagaaggcg
cttgacggacaggtgccggataaggatcgtaagttccagttcactattagctgtgacaag
aacttcggaggagcatacagcttcgaaatgcctgccggagtctccgctgcgttgcctgct
gacaagcagttgcaagcgggaacggtatgtactttgacggagatgctgaccgatgaggct
aacgcggacggaattctcccggacgccatcagcttcagctcctcgaataaggcgatggca
gtatcgaagatcaacaaccaaaccgcgcagttcacggtgccggatgtagataccaaggtg
gttccggaaatccaggtgaccattaagaacatctacagcaaggacttcccggaactaggc
actattgcccgcgataacgctgatcaggacaaagtcctagatcttaagaaaggcgaaaac
gcgcaggtgcaagatgttgccacctggaagaacctagcgcccggcaagtacaccatgatg
ggtactttgatggacaaactgaccggtaagccagtcgtaggggccaacaccccggcggtt
gacttccaagttaagaagggtgaaaagaccggaaccatctatgcgctgttcacagtaccg
ggcgataaggtctcgaccaaggccagctgggtagtcttcgagaaggtctacaaagcctcc
gatgtgaaagatggcaaggttgtgagtaaagctactccggtagtggatcactccaatctc
gaggacgccgaccagacggttcaggtaacgcctccgccggcctcacaggaacaaaagacc
cgggagatcgccacggtcgctaagaacggtactaccttcaacgacggaaccaaggatccc
aacctaggtaaaccggtattgactccgggtcaagatgcggtgatcgtagataccgttaag
tggaagaacctggagcctggtgaatacaccatcaccggaagcctaatggataaatccact
aacgctccgctaacctacctggataaagatggtaaccagaaagatggcgctacagctgaa
cgtggttccttcgccgtcaaggaaggccaaaccgagggagagacgaaagtctacttcacg
gttaagggtgaagctatccaggctaaccgtcagtacgtagtattcgaggatctgtacaag
accgcggatattgatgagcacggacagcccacccccggcgccgaaaaggtagcgcagcat
cacgacatcaacgatgccgcgcagaccctgagcggtgacaagccgaagccgggcactcct
ccagaaactccgaagaccccgaacactccgggaactacgcctccgggaccgactccgcga
accccctctgggttccggggtgtggtgagcacggttctagctaagaccggctctaccacc
ggaatcatggcgatgaccggggttctagcaatggttgcgggaatcggattagtaatgatc
cgccgctaccagcgtgaagaactagaggactag
DBGET
integrated database retrieval system
