Varibaculum cambriense: CYK25_002190
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Entry
CYK25_002190 CDS
T09090
Symbol
rfbC
Name
(GenBank) dTDP-4-dehydrorhamnose 3,5-epimerase
KO
K01790
dTDP-4-dehydrorhamnose 3,5-epimerase [EC:
5.1.3.13
]
Organism
vcb
Varibaculum cambriense
Pathway
vcb00521
Streptomycin biosynthesis
vcb00523
Polyketide sugar unit biosynthesis
vcb00541
O-Antigen nucleotide sugar biosynthesis
vcb01100
Metabolic pathways
vcb01110
Biosynthesis of secondary metabolites
vcb01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
vcb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
CYK25_002190 (rfbC)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
CYK25_002190 (rfbC)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
CYK25_002190 (rfbC)
Enzymes [BR:
vcb01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.13 dTDP-4-dehydrorhamnose 3,5-epimerase
CYK25_002190 (rfbC)
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Motif
Pfam:
dTDP_sugar_isom
Motif
Other DBs
NCBI-ProteinID:
WIK89031
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All DBs
Position
complement(485131..485700)
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AA seq
189 aa
AA seq
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MVEIIPATKQKTDIDGLFVIYPKQVTDERGTIRELFRRSWLAENDIPTVFEQCNNTLTHH
GAVRGLHAEAMTKLVTVVTGEVFGAYVDIRPGSPTFGAVVTVEITPGVMVLVPQGVCNGF
QAVSPGNSEYLYFFTDEWQPGMPGGALTPLDPELGIEWPVKIDPEDRLQISQKDFDAPRL
SDVRAGLSD
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaattattccggcaactaaacaaaaaaccgatatcgacggactcttcgtaatt
tatccaaaacaggttacagatgagaggggcactattcgagagcttttccgccgttcctgg
ttggccgaaaatgatattcctacggtttttgaacaatgtaacaacactcttacccaccat
ggcgcagtgcgagggctacatgcagaagcaatgaccaaactggtgacggtagttaccggt
gaagtatttggagcatacgtagatattcgccctggatcaccaacttttggcgcagtggta
accgtggagattactcccggggtgatggtgttggttccccaaggcgtttgcaatggtttt
caagctgtttcccccggaaacagcgaatatctttatttctttaccgatgaatggcagccg
ggtatgccgggaggggctctgactcctcttgatccagaacttggtattgaatggccagtg
aagattgaccccgaggatcggttgcagatttcgcagaaggatttcgatgctccccgcctt
agcgacgtgcgagctggtctaagcgactaa
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