Vanessa cardui (painted lady): 124534580
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Entry
124534580 CDS
T09161
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03013
Nucleocytoplasmic transport
vcd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124534580
03015 mRNA surveillance pathway
124534580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcd03019
]
124534580
Enzymes [BR:
vcd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124534580
5.6.2.5 RNA 5'-3' helicase
124534580
Messenger RNA biogenesis [BR:
vcd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124534580
mRNA cycle factors
Common to processing body (P body) and stress granule
124534580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
UvrD-helicase
AAA_16
Helicase_RecD
AAA_22
SRP54
nSTAND3
AAA_5
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
124534580
NCBI-ProteinID:
XP_046966453
EnsemblRapid:
ENSVCAG00000009374
LinkDB
All DBs
Position
13:complement(14463131..14471831)
Genome browser
AA seq
1021 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLTASSQ
VNGLGRTDLNSKLSSVGNTIAELQFEEEDEALYSSKELPDHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDESSVSGY
IYRRLLGHEVDEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAHNPGSHFMSTSMFDAREALVPGSVYDRARPPRDPLAYVGPAHAAPVPPAAFPRRAPR
RRPRLSQEPLSQPPPLALSQPASQPDLSQESAAPDCPSQPDGLLSQDSSYQGGFRARAAH
Y
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtatggtccaagttctcaaacgttgacattcttggacaccgaggaa
gctgatcttatcggtgctgatacccaaggatccgaatttgaattcactgatttcactctt
ccatcgcagagccaaacacaggcatcccaacacgatcatggactaacagcatccagccaa
gtgaatggccttggacggacggatcttaactcgaaactttcaagtgtagggaatactata
gcggaattgcaatttgaggaagaagatgaagcactgtatagtagcaaggaactgccagat
catgcatgcaaatactgtggtattcacgaccctgcaaccgttgttatgtgcaatatttgt
aacaaatggttttgtaatggacgaggtaacacctctgggtcacacataattaaccatctt
gtaagagctaaacacaaggaagcagcactccaccgtgacggaccccttggagaaacatta
ctggaatgttattcttgtggtgcacggaatgtttttgtactcggctttataccagccaag
gctgattcagttgttgtacttctgtgtcgtcagccatgtgccgcacaaagttctcttaaa
gatatgaattgggatcaagaacaatggaaaccattaatttcggatcgtgcctttctatcg
tggcttgtaaaagtaccatcagaagctgagcaaatgagagctcgtcaagtaacaccgcag
caaataggacgacttgaagaactttggcgtgacaatgtcgatgctacttttcaagattta
gaaaagcctggagtagatgaggaaccccatcaggttctgttgagatacgaagatggatac
cagtatcagaacatcttcggtccactggtgaagttagaggctgactatgataagcgactc
aaggaatcacaaacgcaggaaggcatagaggtgcgctgggacgtcggcctcaacaagaaa
accattgcgtacttcacgctcgccaagaccgacagcgacatgaagctcatgcacggagat
gagctgagactcagatatgtcggtgagctgcacaaggcctggtcgggcgtcggtcacgtc
atcaaagtgcccgataactacggagacgatgtcggtctggagctgaagagcggggccgga
gctcctcttgactgcacgtccaatttcgtcgtcgattttatctggaagagtacttcgttt
gacaggatgcagctggcgctgcgcaagttcgcggtggacgagtcgtcggtgtcgggctac
atctaccggcgcctgctgggccacgaggtcgacgaggtgctgttccgcgtgcacctgccc
aagcacttcagcgcgcccaacctgcccgacctcaacaggtctcaggtatatgccgtcaag
catgcgcttcagcgacctctgtccctgattcaaggccccccaggaacaggcaagaccgtc
acatcggcgaccatcgtgtaccagctcgttcggcaaaacggtggtccggtactcgtgtgc
gcaccgtcgaatactgccgtcgaccaactcaccgagaaaattcatagaacgggacttaaa
gtggtccgcctctgcgcgaagtcgagagaggccatggagtcttccgtatcgttcctcgcg
ctgcacgaacaggcgcgcgcgctgggctcggccgacagcgaactgcgcaagctcacccgc
ctgaaggaagaggccggggagctgtcggccgccgacgagcggcgctaccgtgccctccgc
cgcgccgctgagaggcgcctcctggacgccgccgacgtcgtgtgcaccacctgcgtcggc
gcgggggaccccagggtcgcccggatgcgtttccagtcgatcctgatagacgagggcatg
cagtccaccgagcccgaatgtatggtaccggtggtgctcggagccaggcaactgattctc
gtcggcgatcactgtcagctgggtcccgtcgtcatgtgcaagaaggccgctaaggcgggc
ctgagccagagtctgttcgagagactcgtggtcctcgggattcgtccctttagattggag
gtgcaatatcgtatgcatcctgaactctcgcgttttccgtctgatttcttttacgagggt
tctcttcaaaacggagtgagcgccgaggagaggcgcctccacaaaatcgatttcccttgg
ccccgaccggatagaccgatgttcttctacgtaacccagggccaggaagagatcgccggc
tcgggaacgtcctacctgaaccgaacggaagcggccaacgtagaaaaacttacgactcgc
ttcttgaaagccggcgtccgccccgagcagatcggcatcataacgccgtatgaggggcag
cggtcgtatctcgtgcagcacatgcagtaccaggggagcctgcacgccaagctctaccag
gagatcgaggtggccagcgtcgacgcgttccagggccgagagaaggacatcataatcatg
tcctgcgtccgctccaacgagcaccagggcatcgggttcctgagcgacccgcgccgcctc
aacgtcgcgctgacgcgcgccaagtacggcctcatcgtggtcggcaaccccaaggtgctc
agcaagcagccgctgtggaaccacctgctcgccttctacaaggagcggcgcgtgctcacc
gagggcccgctgtccaacctcaaggagtccgccatccagttcgccaagcccaagaagctc
gtgaacgcgcacaaccccggctcgcacttcatgtcgacgtccatgttcgacgcgcgcgag
gcgctcgtgccgggctccgtgtacgaccgcgcgcggccgccgcgcgacccgctggcctac
gtggggcccgcgcacgccgcgcccgtgccgcccgccgccttcccgcgccgcgcgccgcgc
cgccgcccgcgcctctcgcaggagccgctgtcgcagccgccgccgctcgcgctgtcgcag
cccgcctcgcagcccgacctcagccaggagtcggcggcgcccgactgcccctcgcagccc
gacggcctgctgtcgcaggactcctcctaccagggcggcttccgcgcgcgcgccgcgcac
tactga
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