Vanessa cardui (painted lady): 124544008
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Entry
124544008 CDS
T09161
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
vcd
Vanessa cardui (painted lady)
Pathway
vcd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vcd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124544008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcd03400
]
124544008
Enzymes [BR:
vcd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124544008
DNA repair and recombination proteins [BR:
vcd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
124544008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
RNA_ligase
BRCT_2
DNA_ligase_IV
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
124544008
NCBI-ProteinID:
XP_046978317
EnsemblRapid:
ENSVCAG00000003782
LinkDB
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Position
1:complement(4601011..4611376)
Genome browser
AA seq
894 aa
AA seq
DB search
MSTAASAVVSANFVSFGELCAVFEQLHKKKRHRPEQNKILANFFNNVRLKMASTEGDKDV
TFFPIMRLLLPQCERERNPYNLKEKKLGNLLVKVLSLNPKSLDAQKLINFSSVQSSTQES
DFAWVAYFVLKNRFVQMSSILSIGDINEMLNNIAKADVENKGILLDEVFSYAIRKLTAQE
FKWFLRIILKNLKLEMSENRILGTFHSHASELYQTCSSLYEVCENLKGSDIISGTESSDE
AAVKLFFAVKPMLSERLDVTNIHQLPTGITYHIEDKFDGERFQMHMENGIFEYFSRNGHK
YAKKYGSTYDSGSLTPDLRDCFSADANNFIIDGEMMGWHKRDQCFGCKGMSYDIKTITEN
SSYRPCYCVFDIIYYNGKSLIGDPERGGLPLKERLKILDTLFTDVPGVIQHSKRSIVKDS
TDVLNALNAAIDNQDEGIVVKDVNSYYKPNKRNEGWYKIKPEYTDDTMVDLDLVVIGADE
AENKRQGRAKSFHVACIDVKPEGARWVCVGRVAGGLAGAERERVCAALQPHWRRTRAAPP
PPCLHFNKETPDFWLLPEHSIVFQVRATELIRSSCYGAPYTLRFPRVMRVRTDKPVSDIM
TLQEFNQLVSTRSPVIKLGRKRVNETQLNQMQPMTLRKRVANLPQVSERFRTKTSGDVQV
ISKALLDRKLCVISDEEDCKKADLVRIIESHGGKHVENPGPDTWCCVVGRMTPLAKKRIE
IQELDIVTASWLRSLPSSDTLCSLSPLNMLSMKRETRWQMSVDYDSFGDSFKDEIDETVL
KKCLQNMRQPIYPTKTEKLKLDEKLFGDNNPFSFLRSCTIHIVNNPLHRLLAKMYGASVS
DDLTSLTHFVIPRDTSYEDVQNFKNDVNVKIVSDEWLETCFQEKRLVNDLDYIM
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagctgcatctgctgtggtatcagcgaattttgtgtcatttggagaattgtgt
gctgtattcgaacaattgcataagaagaagagacatagaccagagcaaaacaaaatatta
gctaatttctttaataatgtcagactcaaaatggctagtactgaaggtgacaaggatgtt
acgttctttccaattatgaggcttctactaccacaatgtgaacgagagagaaacccatat
aatttaaaggaaaaaaaacttggaaatcttcttgtgaaagtattgtcactaaacccaaaa
tcattagacgctcagaaattaataaatttcagttctgttcaaagttcaactcaagagagt
gattttgcatgggtagcatattttgttttaaaaaataggttcgttcaaatgtcgtcaatt
ttatcaataggcgacattaacgaaatgctcaataacattgcaaaggctgatgtcgaaaat
aaaggaatacttctagatgaagtgtttagttatgcaataagaaagctaacagcccaggaa
tttaaatggtttttaagaattatactgaaaaatttgaaactggaaatgagcgagaaccga
atactgggaacgtttcattcgcacgcatcggaactttaccaaacctgtagcagtttatac
gaggtttgtgaaaatctaaaaggcagtgatattatatctggtaccgagagttctgatgaa
gcggctgtcaaattattctttgcggtgaagccaatgctatctgaacgactggatgtaact
aatattcatcagctacctactggtattacatatcatatagaagataaatttgacggagaa
aggtttcagatgcatatggagaacggtatatttgaatatttttcgagaaatggacacaag
tatgcgaaaaaatacgggagcacttatgattctggttcattgacgccagatttgagggat
tgtttttcggcggatgctaataattttataattgatggtgaaatgatgggttggcacaaa
agggatcaatgtttcggttgcaaaggaatgtcatatgacataaaaacgattactgaaaat
tcttcataccgcccttgctattgcgtcttcgatattatatactacaacggaaaatcgctc
attggcgatcctgaaagaggcggtctaccactgaaagagaggctcaagatattggacact
ctattcacagacgtaccgggcgtcatacaacatagcaaacgaagtattgtcaaggatagt
acagacgtcttaaatgctttgaacgcggctatcgacaaccaggacgaaggcattgtagtg
aaagatgtgaattcatattacaagccaaacaaacgtaacgagggctggtacaaaatcaaa
cctgagtacactgatgacactatggtggacttggaccttgtggtcatcggtgcagacgaa
gctgaaaacaagcgacaaggtcgcgccaagagttttcacgttgcgtgtattgatgttaaa
cctgagggcgcgcgctgggtgtgcgtggggcgcgtggcgggcgggctggcgggcgccgag
cgcgagcgcgtgtgcgccgcgctgcagccgcactggcgccgcacgcgcgccgcgccgccg
ccgccctgcctgcacttcaacaaggagacgccggacttctggcttttgccggagcactcc
atcgtctttcaggtgcgagccacggagctgatccgcagctcgtgttacggcgcgccctac
acgctgcgattcccgcgcgtcatgcgagtgcgcacagacaagcctgttagcgatattatg
acgttgcaggagttcaatcagttagtatccacgaggagtccagtgattaaattgggcaga
aaacgcgttaacgagacgcaactgaaccaaatgcagccgatgacgcttcgcaagcgggtg
gcgaatctgccacaagtgtctgagaggttccggacgaaaacgagtggcgatgtacaggtt
atatctaaagcgctgctagatagaaaactatgcgtgatttcggacgaggaggactgcaag
aaagcagacttagtaagaataattgagtcgcacggtgggaaacatgttgaaaacccaggt
ccggacacatggtgttgcgtagtcggaagaatgaccccattggctaagaaacgcatagaa
attcaggaactagacattgtaacggcttcctggctccgttcgcttccttcatcagacact
ctgtgctctttatcccctttaaacatgctgtccatgaagagagaaacgaggtggcagatg
agcgtagactacgattcatttggagatagttttaaagacgaaatagacgaaaccgtttta
aagaaatgtcttcaaaacatgcgacagccaatatatccaacgaaaacagagaaattgaaa
ttggacgagaaattatttggtgacaataatccgttctcatttcttagaagttgcaccata
cacattgtaaacaatcccttgcataggctactggctaaaatgtacggagctagtgtcagc
gatgatcttacttctctgacacatttcgtcataccacgagacacgtcgtatgaagacgta
caaaatttcaagaatgatgtaaacgtcaaaattgtttccgacgaatggttagaaacttgc
ttccaggaaaaaagacttgtaaatgatttagactatataatgtaa
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