KEGG   Vanessa cardui (painted lady): 124544008
Entry
124544008         CDS       T09161                                 
Name
(RefSeq) DNA ligase 4 isoform X1
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
vcd  Vanessa cardui (painted lady)
Pathway
vcd03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:vcd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    124544008
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vcd03400]
    124544008
Enzymes [BR:vcd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     124544008
DNA repair and recombination proteins [BR:vcd03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     124544008
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C BRCT RNA_ligase BRCT_2 DNA_ligase_IV LIG3_BRCT
Other DBs
NCBI-GeneID: 124544008
NCBI-ProteinID: XP_046978317
EnsemblRapid: ENSVCAG00000003782
LinkDB
Position
1:complement(4601011..4611376)
AA seq 894 aa
MSTAASAVVSANFVSFGELCAVFEQLHKKKRHRPEQNKILANFFNNVRLKMASTEGDKDV
TFFPIMRLLLPQCERERNPYNLKEKKLGNLLVKVLSLNPKSLDAQKLINFSSVQSSTQES
DFAWVAYFVLKNRFVQMSSILSIGDINEMLNNIAKADVENKGILLDEVFSYAIRKLTAQE
FKWFLRIILKNLKLEMSENRILGTFHSHASELYQTCSSLYEVCENLKGSDIISGTESSDE
AAVKLFFAVKPMLSERLDVTNIHQLPTGITYHIEDKFDGERFQMHMENGIFEYFSRNGHK
YAKKYGSTYDSGSLTPDLRDCFSADANNFIIDGEMMGWHKRDQCFGCKGMSYDIKTITEN
SSYRPCYCVFDIIYYNGKSLIGDPERGGLPLKERLKILDTLFTDVPGVIQHSKRSIVKDS
TDVLNALNAAIDNQDEGIVVKDVNSYYKPNKRNEGWYKIKPEYTDDTMVDLDLVVIGADE
AENKRQGRAKSFHVACIDVKPEGARWVCVGRVAGGLAGAERERVCAALQPHWRRTRAAPP
PPCLHFNKETPDFWLLPEHSIVFQVRATELIRSSCYGAPYTLRFPRVMRVRTDKPVSDIM
TLQEFNQLVSTRSPVIKLGRKRVNETQLNQMQPMTLRKRVANLPQVSERFRTKTSGDVQV
ISKALLDRKLCVISDEEDCKKADLVRIIESHGGKHVENPGPDTWCCVVGRMTPLAKKRIE
IQELDIVTASWLRSLPSSDTLCSLSPLNMLSMKRETRWQMSVDYDSFGDSFKDEIDETVL
KKCLQNMRQPIYPTKTEKLKLDEKLFGDNNPFSFLRSCTIHIVNNPLHRLLAKMYGASVS
DDLTSLTHFVIPRDTSYEDVQNFKNDVNVKIVSDEWLETCFQEKRLVNDLDYIM
NT seq 2685 nt   +upstreamnt  +downstreamnt
atgagtacagctgcatctgctgtggtatcagcgaattttgtgtcatttggagaattgtgt
gctgtattcgaacaattgcataagaagaagagacatagaccagagcaaaacaaaatatta
gctaatttctttaataatgtcagactcaaaatggctagtactgaaggtgacaaggatgtt
acgttctttccaattatgaggcttctactaccacaatgtgaacgagagagaaacccatat
aatttaaaggaaaaaaaacttggaaatcttcttgtgaaagtattgtcactaaacccaaaa
tcattagacgctcagaaattaataaatttcagttctgttcaaagttcaactcaagagagt
gattttgcatgggtagcatattttgttttaaaaaataggttcgttcaaatgtcgtcaatt
ttatcaataggcgacattaacgaaatgctcaataacattgcaaaggctgatgtcgaaaat
aaaggaatacttctagatgaagtgtttagttatgcaataagaaagctaacagcccaggaa
tttaaatggtttttaagaattatactgaaaaatttgaaactggaaatgagcgagaaccga
atactgggaacgtttcattcgcacgcatcggaactttaccaaacctgtagcagtttatac
gaggtttgtgaaaatctaaaaggcagtgatattatatctggtaccgagagttctgatgaa
gcggctgtcaaattattctttgcggtgaagccaatgctatctgaacgactggatgtaact
aatattcatcagctacctactggtattacatatcatatagaagataaatttgacggagaa
aggtttcagatgcatatggagaacggtatatttgaatatttttcgagaaatggacacaag
tatgcgaaaaaatacgggagcacttatgattctggttcattgacgccagatttgagggat
tgtttttcggcggatgctaataattttataattgatggtgaaatgatgggttggcacaaa
agggatcaatgtttcggttgcaaaggaatgtcatatgacataaaaacgattactgaaaat
tcttcataccgcccttgctattgcgtcttcgatattatatactacaacggaaaatcgctc
attggcgatcctgaaagaggcggtctaccactgaaagagaggctcaagatattggacact
ctattcacagacgtaccgggcgtcatacaacatagcaaacgaagtattgtcaaggatagt
acagacgtcttaaatgctttgaacgcggctatcgacaaccaggacgaaggcattgtagtg
aaagatgtgaattcatattacaagccaaacaaacgtaacgagggctggtacaaaatcaaa
cctgagtacactgatgacactatggtggacttggaccttgtggtcatcggtgcagacgaa
gctgaaaacaagcgacaaggtcgcgccaagagttttcacgttgcgtgtattgatgttaaa
cctgagggcgcgcgctgggtgtgcgtggggcgcgtggcgggcgggctggcgggcgccgag
cgcgagcgcgtgtgcgccgcgctgcagccgcactggcgccgcacgcgcgccgcgccgccg
ccgccctgcctgcacttcaacaaggagacgccggacttctggcttttgccggagcactcc
atcgtctttcaggtgcgagccacggagctgatccgcagctcgtgttacggcgcgccctac
acgctgcgattcccgcgcgtcatgcgagtgcgcacagacaagcctgttagcgatattatg
acgttgcaggagttcaatcagttagtatccacgaggagtccagtgattaaattgggcaga
aaacgcgttaacgagacgcaactgaaccaaatgcagccgatgacgcttcgcaagcgggtg
gcgaatctgccacaagtgtctgagaggttccggacgaaaacgagtggcgatgtacaggtt
atatctaaagcgctgctagatagaaaactatgcgtgatttcggacgaggaggactgcaag
aaagcagacttagtaagaataattgagtcgcacggtgggaaacatgttgaaaacccaggt
ccggacacatggtgttgcgtagtcggaagaatgaccccattggctaagaaacgcatagaa
attcaggaactagacattgtaacggcttcctggctccgttcgcttccttcatcagacact
ctgtgctctttatcccctttaaacatgctgtccatgaagagagaaacgaggtggcagatg
agcgtagactacgattcatttggagatagttttaaagacgaaatagacgaaaccgtttta
aagaaatgtcttcaaaacatgcgacagccaatatatccaacgaaaacagagaaattgaaa
ttggacgagaaattatttggtgacaataatccgttctcatttcttagaagttgcaccata
cacattgtaaacaatcccttgcataggctactggctaaaatgtacggagctagtgtcagc
gatgatcttacttctctgacacatttcgtcataccacgagacacgtcgtatgaagacgta
caaaatttcaagaatgatgtaaacgtcaaaattgtttccgacgaatggttagaaacttgc
ttccaggaaaaaagacttgtaaatgatttagactatataatgtaa

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