Vibrio cholerae O1 2010EL-1786: Vch1786_I1377
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Entry
Vch1786_I1377 CDS
T01650
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vce
Vibrio cholerae O1 2010EL-1786
Pathway
vce03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Vch1786_I1377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vce03400
]
Vch1786_I1377
Enzymes [BR:
vce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Vch1786_I1377
DNA repair and recombination proteins [BR:
vce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Vch1786_I1377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Glyco_tran_WecG
UB2H
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AET26978
LinkDB
All DBs
Position
1:1501839..1505312
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AA seq
1157 aa
AA seq
DB search
MTMTTHSLLSLFSAQGAGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLL
HEVEQFSHSEVALFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQR
QSPRDFLLQHTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGS
SDPFRIDFFDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFE
ARREPESVYSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLT
DVDYRYDQRNIDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQP
LPVLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSL
ACQQTEKYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRN
LAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYS
GGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATF
KATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVA
VLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKL
LSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDL
SIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLV
PEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGL
AQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIR
GAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLP
EEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRL
KVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQ
FVADMLKNFQQNVLPAR
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
gtgactatgactacacactctttactctctctgttttcggcgcaaggtgccggagacaaa
aaagccatcggtaatttacacggcgcaagtttagcgctggccattgcggaactcgccaat
gctcatacgagccatacgttgctcgccgtgcccgatccacaaaccgcgctcaaattgcta
cacgaagtggaacagtttagccacagcgaagtggcgctcttccccgattgggaaacgctg
ccctacgataatttttcaccccatcaggacatcatttctgatcgtatttcgcgtttgtat
cagctcccaagcttaacgcgcggtatcacgattgtcccggtcagtaccttgcttcagcgc
cagtcaccacgtgactttttgttgcagcacaccttaattgttaaacgtggcgatcacttt
tcactggataaactgcgcttgcagttagaaaacagcagctatcgccatgtcgatcaggtc
tttggccccggtgaatacgccagtcgcgggtcgattcttgatctcttccctatgggcagt
agcgacccattccggatcgatttctttgatgatgaaatcgacaccattcgcacctttgat
ccagacaatcagcgctcaatcgctgaaatggatgaaattcgcctgctgcccgcccatgag
tttccgacgacggccgcggcgatcgaagagtttcgtaaccgctggcgacagcgttttgaa
gcgcgccgcgagccggaatcggtttacagccaagtctctaaaggcacttggccggcaggg
attgagtattggcagccactcttttttgagcacagcgagactctgtttgattacctgccc
gccaacagccagcttttggtggttggcgagctggaaaaagccatcgaccagttcttaact
gatgtcgattaccgctacgaccaacgcaatatcgacccactgcgcccactgctgccgccc
aatgagttgtggctgcgtaaagatgagctgtttgcccactttaaaactctgccgcaagtc
caactgacaagctcacctatcgagctgcgtgccggtcgaatgaatgcgcaagttcaacca
ctacccgtattggccgttgaacatcaaaacaaagagcctttggcggcactgcgccaattt
agcgaacaatttaccggcaaaatcattttctcagtcgagtcggaaggtcgccgtgaagcg
ctactggagttgttacagcgcattaaactgcgcccgcaaagccaaaatgatttcagcctt
gcgtgccaacaaacggaaaaatactcactggtgctcggctcagcagagcgcggatttatc
tatggtgataatcaagttgccttgatttgtgagagcgatttactgggcgatcgggtgatt
caacgtcgccgcaaaaaagatcgcaaaaacgtcaccaacagtgatgcggtaatccgcaac
cttgccgagctcaaaccggggcaacccgttgtccatattgatcacgggatcggacgttac
ttaggcttacaaacccttgaagcgggtggcatggtcagcgaatacgtgatgctggagtac
caaaacgaagccaagctgtatgtgccggtttcgtcactgaacctgatcagccgctactcc
ggtggcgcagaagaagccgcccaattgcataaattagggggtgaagcgtgggtcaaagcg
cgccgcaaagcggcggaaaaagtgcgcgatgtcgcggcagaacttttggatgtgtatgcc
aagcgtgaaatcaaaccgggctttaaatttcatctcgaccgtgaacaatacgcgaccttc
aaagccaccttcccgtttgaagaaaccgatgaccaagcaatggcgatcaacgccgtgcta
tccgacatgtgtcaagccaaagccatggatcgtttggtgtgtggtgacgtcggctttgga
aaaacagaagtagcgatgcgcgccgcgtttgtcgcgaccgataacggcaagcaagtcgcc
gtattagttccaactacgctgctcgcccagcagcattttgaaaacttccgcgaccgcttt
gctaacttgccgatccgcgtcgaagtgctctcccgctttaaatcagccaaagagcaaaaa
caaatcctacaagacgtagcggacggcaaagtcgacattctggtcggtacccataagttg
ctctctagcgaaattcgttttgcggatcttggcttgctgattgttgacgaagaacaccgt
ttcggagtgcgccaaaaagaaaaagtcaaagcgatgcgtgccgatgtggatattctgact
ctcactgccacgccaatcccacgtacactcaacatggccatgagtggtatgcgtgacctg
tcgattattgccacacctccagcgcgccgtttagccatcaaaacctttgttcgtcaaagt
gaagatagtgtgatccgtgaagcggtactgcgtgaaattatgcgcggtggtcaggtgtac
tttctgcataatcaggttgaaaccatcgataaagtggccgcagatttagaaaaactggtg
cctgaagcgcggattaccgtcgctcacgggcagatgcgtgaacgtgagctggaaaaagtg
atgaacgatttctaccaccagcgtttcaatttgctggtgtgtaccacgatcatcgaaacc
ggtatcgacgttccgaccgcgaataccatcatcatggatcgcgctgacagcttaggttta
gcccagttgcaccagttacgtggccgcgtcggtcgttcgcatcaccaagcctatgcttac
ctgttaacgccaccgcctaaagcgattaccaaagatgcggtcaaacgcctagaggcgatt
gcctctttagaagatttgggggccggctttactctcgccacgcacgacctagaaattcgc
ggggccggtgaattgttaggcgaagagcaaagtggccagattcagtcggtcggttttact
ctgtatatggaaatgctcgaacaagcggtcgaagccctaaaatcaggcaaagaacctgcg
ctggatgatttactgcgtgagcagaccgaagtcgaaatgcgcctaccagccttgctgccg
gaagagtacatccccgatatcaatacgcggttatccatgtacaaacagatcgccagcgta
gcgagtaaagacgaattggctgaactcaaagtcgaattgattgatcgctttggtaaatta
ccagacgccgcgttaaacttactcgccattgctgaactgaaactcaatgctatgcgccta
aaagtgcgtaaaattgaggcgcatgagcgtggcggatacgtagagttctatcccaatgct
gacattaacccggtgtttttggttaaactgctgcaatcgcaaccaaagttactggcgatg
gatgggccaaccaaattgaaatttaccttgcctttggttgaacgcagtgcgcgcattcaa
tttgtcgctgacatgttgaagaatttccagcaaaatgtactacctgctcggtaa
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