KEGG   PATHWAY: vcj00020
Entry
vcj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio cholerae O1 MJ-1236
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vcj00020  Citrate cycle (TCA cycle)
vcj00020

Module
vcj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vcj00020]
vcj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vcj00020]
vcj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vcj00020]
vcj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vcj00020]
vcj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vcj00020]
Other DBs
GO: 0006099
Organism
Vibrio cholerae O1 MJ-1236 [GN:vcj]
Gene
VCD_002275  citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
VCD_003805  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
VCD_003201  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
VCD_002280  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
VCD_002281  dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
VCD_001943  dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
VCD_001725  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
VCD_002283  succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
VCD_002282  succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
VCD_002278  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
VCD_002279  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
VCD_002276  succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
VCD_002277  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
VCD_001710  succinate dehydrogenase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
VCD_001709  succinate dehydrogenase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
VCD_001708  fumarate reductase subunit C [KO:K00246]
VCD_001707  fumarate reductase subunit D [KO:K00247]
VCD_003032  fumarate hydratase class I aerobic [KO:K01676] [EC:4.2.1.2]
VCD_002804  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
VCD_001175  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
VCD_001630  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
VCD_001941  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
VCD_001942  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
VCD_000798  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vcj00010  Glycolysis / Gluconeogenesis
vcj00053  Ascorbate and aldarate metabolism
vcj00061  Fatty acid biosynthesis
vcj00071  Fatty acid degradation
vcj00190  Oxidative phosphorylation
vcj00220  Arginine biosynthesis
vcj00250  Alanine, aspartate and glutamate metabolism
vcj00280  Valine, leucine and isoleucine degradation
vcj00350  Tyrosine metabolism
vcj00470  D-Amino acid metabolism
vcj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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