Volvox carteri f. nagariensis: VOLCADRAFT_59325
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Entry
VOLCADRAFT_59325 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VOLCADRAFT_59325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vcn03041
]
VOLCADRAFT_59325
Enzymes [BR:
vcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VOLCADRAFT_59325
Spliceosome [BR:
vcn03041
]
Complex A
U2 snRNP components
U2 related factors
VOLCADRAFT_59325
Complex B
VOLCADRAFT_59325
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
9618697
NCBI-ProteinID:
XP_002949526
JGI:
59325
UniProt:
D8TSV0
LinkDB
All DBs
Position
Unknown
AA seq
722 aa
AA seq
DB search
MQEWARLVTSGKLSKGEKLVAVDHSTINYAPFRKNFYIEVAELTKLNDAERAELRKEMDG
IKVRGKDIPAPVRAWTQAGLSSRLLEVLKKRGFDRPLPIQAQALPIIMSGRDCIGIAKTG
SGKTMAFVLPMMRHIKDQPPLQQGDGPVSLVIAPTRELVAQIAKEAKAFGKPLGLNALAV
FGGSGVANQISELKRGVEIVACTPGRMIDLLVTSNGKITNLRRVTYLVLDEADRMFDMGF
EPQITRIVQNIRPDRQTVMFSATFPRQVEVLARKILTDPVEIQVGGRSIVNENITQFVEI
RPEKERFHRLLEILGEWYERGKLLIFVDKQESCDNLFRDLLRYGYPCLSLHGGKDQSDRE
STIADFKGAVCNILVATSIAARGLDVKDLVLVVNYDVPNHHEDYVHRVGRTGRAGAKGTA
ITFIGPDEERYAPDLVKALRESGAAIPQDLQRIMCCPAPRLRSCLQAHGSGYGGSGFKFD
TNEEERFRVDKKAKAKAMGLEVEGEEEAEEAALDAAVAALEADDIRPISAAKAAANAAAA
AAAGGPINPADSVSAVVAAAREKLAEAAKAGLIPAPAAALVGSGAAAAGTAAAAPTAAAA
AAAAAAAAASNPLLAAAQQVAAKLSAQLEINDFPQHARWKITHRETMNQINELTGAALTV
RGTYVAPGRPVPEGERKLFLLIEGPTEGHVKKAKAEIKKIIEETTEKVMRRDAPAAGRYS
IM
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagtgggcgcggctagtgacgagcggtaagctgtccaagggcgagaaactggtg
gccgtggaccactccaccatcaactacgcccctttccgcaagaacttctacatcgaggtg
gcagagctcaccaagctgaatgacgcggaacgggcagagctgcggaaagagatggacggc
atcaaggtgcgcggcaaggatatccccgcgcccgtccgcgcctggacgcaggccggcctg
tccagccggcttcttgaggtgctcaagaagcgcggcttcgatcggccgctgcccatccag
gcgcaggcgcttcccattatcatgtctggccgagactgcattggcatcgcgaagaccggc
tcgggcaagaccatggcgtttgtgctgcccatgatgcgccacataaaggaccagccgcct
ttgcagcagggtgacggtccggtgtcgctggttatcgcccccactcgcgagttggtggcg
cagatcgccaaggaggccaaagcatttgggaagccgctggggctcaacgcgttggcggtg
tttggaggatcaggcgtggcgaaccagatttctgagctgaagcgcggcgtcgagatcgtg
gcctgcacccctggccgcatgattgacttgctggtgacttccaacggcaagattaccaac
ctgcgccgcgtcacttacctcgtgctggatgaggcggacagaatgttcgacatgggattc
gaaccgcagatcacgcgcatcgtccagaacatccggcctgaccgccagacggtcatgttc
agcgccacctttccccggcaggtggaggtgttggcgcgtaagatcctcacagatccagtg
gagatccaggtcggcggtcgcagcattgtcaacgagaacatcacccagtttgtggagata
cggccggagaaggagcgcttccaccggctgctggagatcctgggcgagtggtacgagcgt
gggaagctgctcatctttgtggacaagcaagagagctgtgacaacctgttcagggatctg
ctccgctacggctacccctgtctaagtctccatggcggcaaggaccagagcgaccgggag
tccaccattgccgacttcaagggcgccgtgtgcaacatcctggttgccacttccattgcc
gctcgtggactggacgttaaggacctggtgctggtcgtcaactacgacgtgcccaaccac
cacgaggactacgtgcaccgggtgggtcgcaccggacgtgcgggtgccaagggcacagcc
attacgttcattgggcccgacgaggagcgctacgcgccggacctggtgaaggcgcttcgg
gagagcggtgctgcgattccgcaggacctccagcgaatcatgtgctgtcccgctcctcgg
cttcgttcgtgtctacaggcccatgggagcggttacggcggcagtggcttcaagttcgac
acgaacgaggaggagcgcttccgggtggacaagaaggccaaggccaaggccatggggctg
gaagtggagggcgaggaggaagccgaggaggccgcgttggatgcggcggtagcggcctta
gaagcggatgacatccggcctatctccgctgcaaaggccgcggccaatgctgcagccgcc
gccgccgcggggggccctatcaacccggcggactcagtttcggctgtcgtcgcggcggcg
cgggagaagcttgctgaggcggccaaggcgggtctcattccggcgcctgccgcagctctc
gttgggtcgggggcggcagcggcggggacagcggcggcagcaccgactgccgccgccgcg
gctgcggctgcggctgcggcggcagcttccaatccgttgctggcggcggctcaacaagta
gccgccaagctttctgcacagcttgagatcaacgacttcccgcagcacgcccgctggaag
atcacgcaccgcgagactatgaaccaaatcaacgagctgacgggagcagctctgacggtt
cgtgggacgtacgtggcgcccggcaggcctgtccccgaaggcgagcggaagctcttccta
ctcattgagggccccacagagggccatgtcaagaaggccaaggcggagataaaaaagatc
atcgaggaaaccacggagaaggtcatgcggcgagacgcgcctgcagccgggcggtacagt
atcatgtag
DBGET
integrated database retrieval system
