KEGG   Volvox carteri f. nagariensis: VOLCADRAFT_66043
Entry
VOLCADRAFT_66043  CDS       T01330                                 
Name
(RefSeq) hypothetical protein
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
vcn  Volvox carteri f. nagariensis
Pathway
vcn03082  ATP-dependent chromatin remodeling
vcn03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:vcn00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    VOLCADRAFT_66043
   03083 Polycomb repressive complex
    VOLCADRAFT_66043
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:vcn03036]
    VOLCADRAFT_66043
Enzymes [BR:vcn01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     VOLCADRAFT_66043
Chromosome and associated proteins [BR:vcn03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     VOLCADRAFT_66043
   HDAC complexes
    Sin3A-HDAC complex
     VOLCADRAFT_66043
    BRAF-HDAC complex
     VOLCADRAFT_66043
    REST complex
     VOLCADRAFT_66043
    SHIP complex
     VOLCADRAFT_66043
    MiDAC complex
     VOLCADRAFT_66043
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     VOLCADRAFT_66043
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    VOLCADRAFT_66043
  Chromatin remodeling factors
   NuRD complex
    VOLCADRAFT_66043
SSDB
Motif
Pfam: Hist_deacetyl Peripla_BP_7
Other DBs
NCBI-GeneID: 9626440
NCBI-ProteinID: XP_002955640
JGI: 66043
UniProt: D8UAL1
LinkDB
Position
Unknown
AA seq 414 aa
MKPAEKVVAYFYDDDIGNYCYGGGNPMRPHRARMCYTLVDSYGLTKKMMVQRPRAREFEE
LTQFHADDYINFLRGVTPNMVDENMTQLRRFNMGIAGEADCPVFDGLYEYCQVYAGGSVD
GAAQLASGAAEISFNWSGGMHHAKKAEASGFCYVNDIVMAILELLKTYARVLYVDIDIHH
GDGVEEAFYLTDRVMTVSFHKYGEFFPGTGALDDIGYGKGKYYTVNVPLKDGMDDDSYRL
VYEPIMQKVMEMYQPGAIVMCCGADSLSGDRLGCFNLSLEGHSNCLEFLAKFNVPMVILG
GGGYTLRNVARCWCYETGRMMNIDLPDGYLDTQRLRIAVSNMKNANERQELEQIKTAVLE
HLSHLPPVPSAQMAYVPPRMGRVKAEEGLPEEDPDVRGGGQAHTDARRWGKGWV
NT seq 1245 nt   +upstreamnt  +downstreamnt
atgaagccagctgagaaagtagtagcctacttttatgatgacgatattggcaactattgt
tacggtggtggcaatcctatgcgaccgcacagagcgcgtatgtgctacacgctggttgac
agttatgggctcaccaagaagatgatggttcagcgaccgcgcgccagagagtttgaggag
ctaacgcagttccatgcagacgattacatcaactttctgcggggagttacaccgaatatg
gttgacgagaacatgacgcagcttcgacgctttaacatgggcatagctggagaagctgac
tgcccggtcttcgacgggctgtacgagtactgtcaggtgtacgctgggggatcagttgat
ggagctgctcaactggcgagcggcgccgcggaaatctcattcaactggtccggtggtatg
caccacgccaagaaggcggaggcatcggggttctgctatgtgaatgacatcgtcatggct
atcctcgagctactcaagacgtatgcgcgcgtcctttatgttgacattgacatccaccac
ggggatggcgtggaggaggcgttttacctaactgaccgagtaatgacggtgtcgttccat
aagtacggcgagttcttccctggtactggcgcgctggatgacattgggtacggcaagggg
aagtactacacggttaacgtgccgctaaaggacggcatggacgatgactcgtaccggctg
gtgtatgaacctatcatgcagaaggtgatggagatgtaccagccgggcgccattgtgatg
tgctgcggggccgactcgctgtcgggtgaccgcctgggctgtttcaacctgtcactggag
ggccacagcaactgcctggagttcctggcgaagttcaatgtgcccatggtgatcctgggt
ggcggcggctacaccctgcgaaacgtggctcggtgctggtgctacgagacgggtcggatg
atgaacattgacctcccggatgggtatctagacacccaacggctgcgtatcgctgtgtcc
aacatgaagaacgccaatgagcggcaagagctggagcagatcaagaccgctgtgttggag
cacctgagccacctgccgccagtacccagcgcccagatggcctatgtgccgccccgcatg
gggagggtgaaggcggaggaggggcttccggaggaggatccggacgtgcgagggggcggc
caggcgcacacggacgctcgcaggtggggaaagggctgggtgtag

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