Volvox carteri f. nagariensis: VOLCADRAFT_66043
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Entry
VOLCADRAFT_66043 CDS
T01330
Name
(RefSeq) hypothetical protein
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
vcn
Volvox carteri f. nagariensis
Pathway
vcn03082
ATP-dependent chromatin remodeling
vcn03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
vcn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
VOLCADRAFT_66043
03083 Polycomb repressive complex
VOLCADRAFT_66043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vcn03036
]
VOLCADRAFT_66043
Enzymes [BR:
vcn01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
VOLCADRAFT_66043
Chromosome and associated proteins [BR:
vcn03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
VOLCADRAFT_66043
HDAC complexes
Sin3A-HDAC complex
VOLCADRAFT_66043
BRAF-HDAC complex
VOLCADRAFT_66043
REST complex
VOLCADRAFT_66043
SHIP complex
VOLCADRAFT_66043
MiDAC complex
VOLCADRAFT_66043
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
VOLCADRAFT_66043
Heterochromatin formation proteins
Other heterochromatin formation proteins
VOLCADRAFT_66043
Chromatin remodeling factors
NuRD complex
VOLCADRAFT_66043
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Peripla_BP_7
Motif
Other DBs
NCBI-GeneID:
9626440
NCBI-ProteinID:
XP_002955640
JGI:
66043
UniProt:
D8UAL1
LinkDB
All DBs
Position
Unknown
AA seq
414 aa
AA seq
DB search
MKPAEKVVAYFYDDDIGNYCYGGGNPMRPHRARMCYTLVDSYGLTKKMMVQRPRAREFEE
LTQFHADDYINFLRGVTPNMVDENMTQLRRFNMGIAGEADCPVFDGLYEYCQVYAGGSVD
GAAQLASGAAEISFNWSGGMHHAKKAEASGFCYVNDIVMAILELLKTYARVLYVDIDIHH
GDGVEEAFYLTDRVMTVSFHKYGEFFPGTGALDDIGYGKGKYYTVNVPLKDGMDDDSYRL
VYEPIMQKVMEMYQPGAIVMCCGADSLSGDRLGCFNLSLEGHSNCLEFLAKFNVPMVILG
GGGYTLRNVARCWCYETGRMMNIDLPDGYLDTQRLRIAVSNMKNANERQELEQIKTAVLE
HLSHLPPVPSAQMAYVPPRMGRVKAEEGLPEEDPDVRGGGQAHTDARRWGKGWV
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaagccagctgagaaagtagtagcctacttttatgatgacgatattggcaactattgt
tacggtggtggcaatcctatgcgaccgcacagagcgcgtatgtgctacacgctggttgac
agttatgggctcaccaagaagatgatggttcagcgaccgcgcgccagagagtttgaggag
ctaacgcagttccatgcagacgattacatcaactttctgcggggagttacaccgaatatg
gttgacgagaacatgacgcagcttcgacgctttaacatgggcatagctggagaagctgac
tgcccggtcttcgacgggctgtacgagtactgtcaggtgtacgctgggggatcagttgat
ggagctgctcaactggcgagcggcgccgcggaaatctcattcaactggtccggtggtatg
caccacgccaagaaggcggaggcatcggggttctgctatgtgaatgacatcgtcatggct
atcctcgagctactcaagacgtatgcgcgcgtcctttatgttgacattgacatccaccac
ggggatggcgtggaggaggcgttttacctaactgaccgagtaatgacggtgtcgttccat
aagtacggcgagttcttccctggtactggcgcgctggatgacattgggtacggcaagggg
aagtactacacggttaacgtgccgctaaaggacggcatggacgatgactcgtaccggctg
gtgtatgaacctatcatgcagaaggtgatggagatgtaccagccgggcgccattgtgatg
tgctgcggggccgactcgctgtcgggtgaccgcctgggctgtttcaacctgtcactggag
ggccacagcaactgcctggagttcctggcgaagttcaatgtgcccatggtgatcctgggt
ggcggcggctacaccctgcgaaacgtggctcggtgctggtgctacgagacgggtcggatg
atgaacattgacctcccggatgggtatctagacacccaacggctgcgtatcgctgtgtcc
aacatgaagaacgccaatgagcggcaagagctggagcagatcaagaccgctgtgttggag
cacctgagccacctgccgccagtacccagcgcccagatggcctatgtgccgccccgcatg
gggagggtgaaggcggaggaggggcttccggaggaggatccggacgtgcgagggggcggc
caggcgcacacggacgctcgcaggtggggaaagggctgggtgtag
DBGET
integrated database retrieval system