Volvox carteri f. nagariensis: VOLCADRAFT_86581 Help Entry VOLCADRAFT_86581  CDS       T01330                                  Name (RefSeq) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism vcn  Volvox carteri f. nagariensis Pathway vcn03013   Nucleocytoplasmic transport vcn03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:vcn00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     VOLCADRAFT_86581    03015 mRNA surveillance pathway     VOLCADRAFT_86581  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:vcn03019]     VOLCADRAFT_86581 Enzymes [BR:vcn01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      VOLCADRAFT_86581     5.6.2.5  RNA 5'-3' helicase      VOLCADRAFT_86581 Messenger RNA biogenesis [BR:vcn03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      VOLCADRAFT_86581    mRNA cycle factors     Common to processing body (P body) and stress granule      VOLCADRAFT_86581 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD SLFN-g3_helicase nSTAND3 Helicase_RecD ATPase AAA_16 UvrD-helicase AAA_22 Ribosomal_S13_N SRP54 PhoH Viral_helicase1 AAA Motif Other DBs NCBI-GeneID:  9617606 NCBI-ProteinID:  XP_002946371 JGI:  86581 UniProt:  D8TJ19 LinkDB All DBs Position Unknown AA seq 1135 aa AA seqDB search MSGLQRCGQILANLEVRRPCTYDEGNRSEARPWLPSHRLWTPCGPVPGCTSLNDAQPQAM AETYHTQASQAMDFGFGYPDGGALGLTFQDYGVTQDVHPGTLQFNDFTQGVSQALSWGAP VGIASTAQRLAQQLRFQEAFDEAEEEPTVTVPEKPPEWACAYCGIHNPACVVKCLSTNKW FCNGRVHGSGSCIILHLVKSKNKEVQLHKDSPLGDTVLECYASGSRNLFVLGFVPVKSEN TVVLLARDTPPNHPTIRDLNLDLSQWQPIVEDRGLVPWLVKQPGEQELLRARHLTLAQVL VGNRSVMLVNKLEELWKTRPNAGVDDLDEASGGDDGAVQPVALKYEDSAQYQAVFEPLVK LEADYDRAIKESQSRDDISLRWDWGLNNKRVAYFYFPRDDNELKLMQGDELKLRHKNAGN RGPWEALGHVLTYQQSEEVCLELFANDVPEDCTVGYSVDFVWRGTSYDRMRNALNTFRKY SASISGYLYHLILGHPVESVTLKIPLPKAGFAVPTLPELNHSQLHAVKSVLHQPLSLIQG PPGTGKTVTSAAIVYHLAHSGTGQVLVAAPSNVAVDQLAHKMDQTGLKVVRLCAKTREAV ASPVEHLTLHYQVTHMAVPEGERLRKLLALRGAQGGLNASDEKELKSLRRRLEMEVLENA DVVCTTCVGAGDPRLANFRFQHVLIDESTQAAEPECLIPMVLGAKQLPHAAQWVFLLLAS PHVHRWRTSMLTAKVILVGDHCQLGPVIMCKKAAEAGLCQSLFERLRLLGVKPIRLQVQY RMHPCLSEFPSNTFYEGTLQNGTGMGERRLVGVDFPWHNPDKPMMFWVQLGAEEISASGT SYLNRTEAAAVEKVVTRFLQNGMSPSQIGVITPYEGQRAHVVSVMVRNGAVRQDLYKEIE VSSVDAFQGREKDIIVLSCVRSNEHSSIGFLSDPRRLNVALTRARYGLVVLGNPRVLSRQ PLWNSLLQYFKESGCLVEGPLTNLKPSMVQLHKPKRVFDRGSFGVGTLTTNRYQPPEKVG DPLPSKATPPSQQQQQQPQASGLQMTATGQTGAAASASGAGAAANGSGGGGAGSMRYSGR ATGGASGAAAVASSSGRLNGTAGTGLLSVGKGSTQTFMPFAMPTYSIPAANGRAK NT seq 3405 nt NT seq  +upstreamnt  +downstreamnt atgtcaggcttgcaaaggtgcgggcaaatcctagctaacctggaggtgagaaggccctgc acctatgatgagggcaatagaagcgaagcgcggccatggttaccctcacatcgactgtgg acgccgtgtgggcctgtaccgggctgcacttccttgaacgacgcccagccgcaggcaatg gctgagacttaccatactcaagcctcacaggctatggatttcggatttggttacccagat ggcggtgctcttggtttgacgtttcaagattatggggtaacacaagatgtgcaccccggc acgcttcagtttaacgatttcacacagggagtcagccaggcgctcagctggggggccccc gttggcatagcgagcacggcgcagcggctcgcacagcagctacggttccaagaggccttc gatgaggccgaggaggagcccacggtgacggtgcccgaaaagccccccgagtgggcctgc gcgtactgtgggattcacaatccggcatgcgtggtcaagtgcttaagtaccaacaaatgg ttctgcaatggtcgtgtccacggctcaggctcgtgtatcatcttgcacctggtcaagagc aagaacaaggaggtacagctgcacaaggattcgccgcttggagacacggttcttgagtgc tacgcttccggcagtcgcaacctgtttgtgcttggcttcgtgccggtgaaaagcgagaac acggtggtgctactagcacgtgacacgccgcccaatcaccccactattcgcgacctgaac ctggacctgtcccagtggcagcctattgtggaggaccgcgggctggtgccgtggctcgtc aaacagcccggcgagcaggagctgcttcgcgccaggcacctcacgctggcgcaggtgttg gtaggcaatcgcagcgtgatgctggtgaacaagctcgaggagctgtggaagacgcgcccc aacgcaggcgttgacgacctggacgaagcttcgggtggcgatgacggcgctgtgcagccg gtggcgctcaagtacgaggattcagcgcaataccaggcagtgttcgagccgctggtgaag ttggaggccgattacgaccgcgccataaaagagagccagtcgcgtgatgacatctctctt cgctgggactggggccttaacaacaagcgggtggcgtatttttactttcctcgtgatgat aatgaactcaagctcatgcagggcgacgagctcaagctgcgacacaagaatgcgggcaat cgcggtccgtgggaggcgctggggcacgtgctgacgtatcagcagagcgaggaggtctgc cttgagctctttgcaaatgacgtacccgaggactgcacggtgggctattcggtggacttc gtctggcggggcacctcctacgaccggatgcggaacgcattgaacaccttccgcaagtat tcagcttccatttcaggttacctgtaccacctgattttggggcaccctgtggagtcggtg acgttaaaaatcccgctacccaaggcgggtttcgcggtgcccaccctgccggagctcaac catagccagctgcatgcggtcaaatcggtgctgcatcagccgctgtcgctcatccagggt ccacctggcacgggaaagacagtgaccagcgcagccatcgtataccatctcgcccactcg ggcacggggcaggtgctcgtggcggcgccatctaacgtggcagtggaccagctggcacat aagatggaccagaccggcctcaaagtggtgcgcttgtgcgccaagacccgcgaggcggtc gcatcacccgtggagcacctgacgctgcattaccaggtgacccacatggcggtgcccgag ggcgagcggctgcgcaagctgctggcgcttcgaggcgcgcagggtgggctgaacgcatcg gacgagaaggagcttaagagcttgcggcggcggctggagatggaggtgctggagaacgca gacgtggtgtgcaccacgtgcgtgggcgcgggtgacccccgcctcgcgaacttcaggttc cagcatgtgctgattgatgaaagcacccaagctgcggagcccgagtgcctcatccccatg gtgcttggggcaaagcagctgccgcacgcagcccaatgggttttccttctgctagctagc ccacatgtccacaggtggaggactagcatgcttaccgcaaaagtcatcctggtgggtgac cactgccagctgggtcccgtcatcatgtgcaagaaggccgcggaggcggggctgtgccag tcgctatttgagcggttgcgcctgctgggtgtcaagcccatccggctgcaggtccagtac cgcatgcatccctgcttgtcggagttcccctccaataccttttacgagggcacgctgcaa aatggcacgggcatgggcgagcgccgcctggtgggcgtggactttccctggcacaatccc gataagccgatgatgttctgggtgcagctgggagcggaggagatcagcgctagcggcacc tcctacctgaaccggaccgaggcagcggctgtcgagaaagtggtaacccgcttcctgcag aacggcatgtcaccgtcacagattggcgtcatcacgccgtacgagggccagcgcgcacac gtggtttcagtaatggtgcgcaacggagcagtacgccaagatctgtacaaggagatcgag gtgtccagtgtggacgcattccagggacgcgagaaggacatcattgtgctgtcgtgcgtg cgttccaacgaacattcctcaatcggcttcctgtctgacccgcgccgcctcaacgtggcg ctcacccgcgcacgctatgggctggtggtgctgggcaaccctcgagtgctgtctcgtcag ccgctctggaacagcttgctgcagtacttcaaggagagcggctgcctggtggaggggccg ctcactaacctgaagccctctatggtgcagctgcacaagcccaagcgggtctttgaccgc gggtcttttggcgtcggcacgctgaccacgaaccggtaccagcccccggagaaggtgggc gacccactccccagcaaggccacgccgccgtcacagcaacaacagcagcagcctcaggcg agtggcctgcagatgacggcgacgggccagaccggggccgcggcatcggctagcggtgcc ggagctgcagccaacggcagcggcggcggaggcgctggcagcatgcggtactccgggcgc gccacgggcggtgcgtccggggcggcggcggtggcgtcctcctccgggcggctgaacggc acggcgggaaccgggttgctgagtgtcgggaagggctcgacgcagacgtttatgccgttc gctatgccgacgtacagcatcccagcggcgaatggccgggcgaag

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