KEGG   Vibrio cholerae O1 O395: VC0395_A2306
Entry
VC0395_A2306      CDS       T00520                                 
Symbol
gspD
Name
(GenBank) general secretion pathway protein D
  KO
K02453  general secretion pathway protein D
Organism
vco  Vibrio cholerae O1 O395
Pathway
vco03070  Bacterial secretion system
vco05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vco00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    VC0395_A2306 (gspD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    VC0395_A2306 (gspD)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vco02044]
    VC0395_A2306 (gspD)
Secretion system [BR:vco02044]
 Type II secretion system
  General secretion pathway protein
   VC0395_A2306 (gspD)
SSDB
Motif
Pfam: Secretin Secretin_N type_II_gspD_N0
Other DBs
NCBI-ProteinID: ABQ20580
UniProt: A0A0H3AJ78
LinkDB
Position
2:complement(2459042..2461066)
AA seq 674 aa
MKYWLKKSSWLLAGSLLSTPLAMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGK
VDVRSFDTLNEEQYYSFFLSVLEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERAN
GDEVITQVVAVKNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEII
RRVDQAGDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILIS
GDPKVRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPT
TSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGIN
LGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGD
YTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEV
PVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDV
RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKN
LMVFIKPTIIRDGVTADGITQRKYNYIRAEQLFRAEKGLRLLDDASVPVLPKFGDDRRHS
PEIQAFIEQMEAKQ
NT seq 2025 nt   +upstreamnt  +downstreamnt
gtgaaatattggctgaaaaaaagttcatggctgttggcgggcagtttgctgtctacccct
ctagcgatggcaaacgagtttagcgccagctttaaaggcaccgacattcaagaatttatc
aatattgtgggacgcaatcttgagaaaaccatcattgtcgacccttcggtacgcggcaaa
gtcgatgtgcgcagttttgataccttaaacgaagagcaatattacagtttcttcctcagt
gtgctcgaagtgtacggtttcgccgtcgttgaaatggataatggcgtactgaaagtcatc
aaatcgaaagatgcaaagacctcagccattccggtgttgagtggtgaagagcgcgccaat
ggcgatgaagtcattacccaagtggtcgcggtgaaaaacgtttccgtacgcgagttgtcc
cctttgctgcgccaactgattgataacgcaggggcggggaacgtagtgcactacgatccg
gcgaacatcattttgatcacggggcgagctgcggtagtgaaccgtttagcggaaattatt
cgtcgcgttgaccaagccggtgacaaagagattgaagtggttgagcttaataatgcatcg
gcagctgaaatggtgcggattgttgaagcgctcaacaaaacgacagacgcgcaaaacacc
cctgaattcttaaagcccaagtttgtggcagacgagcgtaccaactcgattttgatttct
ggcgatcctaaagtgcgcgagcgcctcaagcgtctgatcaagcagttggatgttgagatg
gcggccaaaggcaataaccgcgtggtgtatttgaaatacgccaaagctgaagatctggtc
gaagtactgaaaggggtgtctgagaacctgcaagcggaaaaaggcaccggacagccgacc
acttcaaaacgtaatgaagtgatgattgccgcgcacgctgacaccaactcgttagtgctt
actgcgccgcaagacattatgaatgcgatgctggaagtgattggacagctagatattcgc
cgtgcgcaagtgttgattgaagcgctgattgtcgaaatggcagagggcgatgggatcaac
cttggtgtgcagtggggctcgctggaaagtggttcagttatccaatatggcaacactggc
gcgtcgattggcaatgtgatgattggtcttgaagaagccaaagacacaacccaaaccaaa
gcggtttatgatactaataacaacttcttgagaaatgaaacgacgaccaccaaaggggat
tacaccaagttagcctctgcattgtcgagcattcaaggtgctgcagtcagcatcgcgatg
ggcgactggacggccttaatcaacgcggtctctaatgattccagctcgaatatcctgtca
tcacccagcattacggtgatggataacggtgaagcctcctttatcgtgggtgaagaagtg
ccggttatcacaggttctactgcaggctctaataacgacaacccattccaaaccgtggat
cgtaaagaagtcggtatcaagcttaaagtggtgccgcagatcaacgaaggtaactcagtc
cagctcaatattgagcaagaagtctcgaacgtgttgggcgccaatggagcggtagacgtg
cgttttgcgaagcgtcagctcaacacttctgtgatggtgcaagatgggcagatgttggtg
ctcggcggtttgattgatgagcgagctcttgagagtgagtcgaaagtcccgctcttgggg
gatattcctctgctgggtcaactgttccgctcaaccagctcgcaagtggaaaagaaaaac
ctgatggtgtttatcaagccgaccattattcgtgatggcgtgacggccgatggcatcacc
caacgtaaatacaactacatccgcgccgagcaactgttccgcgccgaaaaaggtttacgt
ctgctggatgatgctagcgtgcctgtgttgccgaaatttggcgatgaccgccgccattca
cctgaaattcaagcctttattgagcagatggaagccaagcaatga

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