Vescimonas coprocola: MM50RIKEN_22830
Help
Entry
MM50RIKEN_22830 CDS
T07634
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vcop
Vescimonas coprocola
Pathway
vcop03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MM50RIKEN_22830 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcop03400
]
MM50RIKEN_22830 (mfd)
Enzymes [BR:
vcop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MM50RIKEN_22830 (mfd)
DNA repair and recombination proteins [BR:
vcop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MM50RIKEN_22830 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
ERCC3_RAD25_C
TPR_16
Motif
Other DBs
NCBI-ProteinID:
BCK82520
UniProt:
A0A810Q3A0
LinkDB
All DBs
Position
2365856..2369395
Genome browser
AA seq
1179 aa
AA seq
DB search
MEALLRELWQLREIQELAQLMESGGGPALVTGLSPVHRAMTAAALRLKSGRPLLMLCADE
GEARRQAADLRSLTGREPVLLTGRELHWRELAAVSRQWEYRRLEALYRIRQEESPVIVTT
ADALALRCIPPQVLDRCSFTLRSDGRYQVEELARRLTAAGYTRTEQVEGPGQFALRGGIL
DVYSPGAEAPVRCEFFDDEVDSLGFFDVATQRRTENCREALLLPAGEVLPLWRDGAAEET
AERLETLAGRMKDKPVARQLLSDADLLCQGIIPNGSDRFLAAVYPEMVTAMDYLPKECLV
CVSESGRTAEALKGWLSQLKADVTSAMESGILCGPMAEAALPETDFARQLERFPVCQLES
LPTSRYLLAPKALLQIDARQLSGYGGSLETAVTDLTHYLTSGCRVMVLCGGQVRARNLLE
LLEARRIPAALDLEGERSPVRNVVLITLGTLSAGCEYPALQLAVLTEGQLTTPLAGKAKK
ARPKRDSNQQRLQSYADLTPGDLVVHQHHGIGRFVGMIRMPTDGVEKDYIKIAYAGSDCL
YVPATALDLVSKYIGAGEDTEHTRLNKLGGTEWAKTTHRAKAAAKDLAEGLIKLYAQRQR
EAGHAFSPDSPWQQEFEDAFDYTETDDQLQAIREIKADMEKPVPMDRLLCGDVGYGKTEV
ALRAVMKCILDGKQAAILVPTTVLAQQHYATAMNRFRSFPVTVEVLSRFRTPKQTKEILE
RAAQGKIDLLIGTHRLLAKNLVFKDLGLLIIDEEQRFGVTHKEKLRERVRQVDTLTLSAT
PIPRTLNMALSGIRDMSTIEEPPRDRQPVQTYVMEHEWPAVAEAIRRELNRGGQVYYLHN
RVENIESTAGRLRQWLGEDVRLAMAHGKMSEQELSRVMQQMADGEVQVLVCTTIIETGID
IPNVNTLIIEDADRLGLAQLHQIRGRIGRSSRRAYAYLTYRPGKVLTEVASKRLSAIREY
VDFGAGFRIAMRDLEIRGAGNLLGPEQSGYMMSVGYDMYLKLLNDAVLEQQGKGREIRPE
CSADLTVAAYIPERYVPSDRQRMDLYRRIAALRDNDAAADLIDELTDRYGDPPRPVTALL
DVALLRAAAADTGVTDITQKGQTLLLSLGQRMDVPSLMAVCTLPAYRSRLLLSAGEHPKL
TLHLKPGEEALDAAGHLVEALSLKRKEISGETPAEGGTL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggaagctctgctgcgggagctgtggcagctccgggagatacaggagctggcgcagctg
atggagagcggcggcggaccggcactggtgacgggcctgagcccggtacaccgggccatg
acggcggcagcgctgcggttgaagtccgggcgtcccctgctgatgctctgcgccgacgag
ggggaggcccggcggcaggcggcggacctgcggtccctcaccggccgggagcctgtcctg
ctgacgggccgggagctccactggcgggagctggcggcggtgagccgtcaatgggaatac
cggcggctggaggccctgtaccgcatccggcaagaggagtccccggtgatcgttaccacc
gccgatgcactggccctgcgatgcattcccccgcaggtgctggatcggtgcagcttcacc
ctccgctctgacgggcggtatcaggtggaggagctggcccggcggctgacggcggcgggc
tatacccgcacggagcaggtggaggggccgggacagttcgccctgcggggcggtattctg
gacgtctactcccccggcgccgaggccccggtgcgatgcgaattttttgacgacgaggtg
gactcgctgggcttcttcgacgtcgccacccagcggcggacggagaactgtcgggaggcg
ctgctgctgccggccggcgaggtacttcctctgtggcgggacggtgcggcggaggagacc
gccgaacggctggagacgctggcgggacggatgaaggataagcccgtggcccggcagctg
ctgtcggatgctgatctgctgtgtcagggcatcatccccaacggcagcgaccggtttctg
gcagcggtatacccggagatggtgacggccatggactatctgcccaaggagtgtctggtg
tgcgtcagcgagagcgggcgcacagcagaggccctgaagggctggctgagccagctgaag
gcggacgtcacctccgccatggagagcggcatcctgtgcggccccatggcagaagcagcc
ctgccggagacggactttgcccggcagctggagcgcttccccgtgtgccaactggagagc
ctgcccaccagccggtatctgctggcgcccaaggccctgctgcagatcgacgcacggcag
ctgtccggctacggtggatcgctggagacggcggtgacggacctgacccactatctcacc
agcggctgccgggtgatggtgctgtgcggcggacaggtgcgggccagaaatctgctggag
ctgctggaggcccggaggatcccggcggcactggatctggagggggagcgctccccagtg
cggaatgtggtgctcattacgctgggtactctgtccgccgggtgcgagtacccggcccta
cagctggcggtgctgacggagggtcagctgactacgccgctggcaggcaaggccaaaaag
gcccgccccaagcgggacagcaatcagcagagactgcaatcctacgccgacctgaccccc
ggcgatctggtggtgcatcagcaccacggcatcggccgcttcgtggggatgatccggatg
cccaccgacggagtggagaaggactacatcaagatcgcctatgccggcagcgactgcctg
tatgtgccggccacggcgctggatctggtgagcaagtatatcggggccggggaggatacc
gagcacacccggctcaataagctgggcggcacggagtgggccaagaccacccaccgggcc
aaggcggccgccaaggatctggcggagggcctcatcaagctctatgcccagcgacagcgg
gaggcgggtcacgccttctccccggactccccgtggcagcaggagttcgaggatgccttc
gactacacggagaccgacgatcaattacaggccatccgggagatcaaggcggatatggaa
aagcccgtacccatggaccggctgctgtgcggcgatgtgggctacggcaagacggaggtg
gccctgcgggcggtgatgaagtgcatcctggacggcaagcaggctgccattctggtaccc
accacggtgctggcccagcagcactatgccaccgccatgaaccgcttccgctccttcccg
gtgacggtggaggtgctgagccggttccgcacccccaagcagaccaaggaaattctggag
cgggcggcgcagggaaagatcgacctgctcatcggcacccatcgtctgctggcgaagaat
ctggtgttcaaggatctgggactgctgatcatcgacgaggagcagcgcttcggcgtgacc
cacaaggagaagctccgggagcgggtgcgtcaggtggacaccctgaccctgtccgccacc
cccattccccggacgctgaacatggccctgtcgggcatccgggatatgtccaccatcgag
gagccccccagggaccgccagccggtgcagacctacgtcatggagcacgagtggcccgcc
gtggcggaggccatccggcgggagctgaaccggggcgggcaggtctactacctgcacaac
cgggtggagaacatcgagtccaccgccggacggctgcgccagtggctgggggaggatgtg
cgcctcgccatggcccacggcaagatgtccgagcaggagctgagccgggtgatgcagcag
atggccgacggcgaggtgcaggtgctggtctgcaccaccatcatcgagacgggcatcgac
atccccaacgtgaacaccctcatcatcgaggacgccgaccggctggggctggcgcagctg
caccagatccggggccgcatcgggcgctcctcccgccgggcctacgcctatctcacctac
cgccccggcaaggtgctgacggaggtggccagcaagcggctgtccgccatccgggaatat
gtggacttcggcgcaggtttccgcatcgccatgcgggatctggagatccgtggtgccggg
aatctgctggggcctgagcagtccggctacatgatgagcgtgggttatgatatgtatctg
aagctgctgaacgacgccgtgctggagcagcaggggaagggccgggagatccggccggag
tgctctgccgatctgacggtggcggcgtacatcccggagcggtatgtcccctccgaccgg
cagcggatggacctgtaccggcgcattgccgccctacgggataacgatgcggcggcggac
ctcatcgacgagctgacggaccgctacggcgacccgccccgaccggtgacggcgctgctg
gatgtggcgctgctgcgggcggcagccgccgacaccggggtgacggatattacccagaag
ggccagacgctgctgctgagcctgggccagcggatggacgtccccagtctcatggcggta
tgcactctgcctgcctaccgcagccgcctgctgctgtcggcgggggagcatcccaagctg
acgctgcacctgaagcccggcgaggaggcgctggacgccgccgggcatctggtggaggca
ctgtctctcaaacgcaaggaaatttcgggcgaaacgcccgcagaaggaggaaccctatga
DBGET
integrated database retrieval system
