Vespa crabro (European hornet): 124431108
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Entry
124431108 CDS
T09462
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
vcrb
Vespa crabro (European hornet)
Pathway
vcrb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vcrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124431108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcrb03400
]
124431108
Enzymes [BR:
vcrb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124431108
DNA repair and recombination proteins [BR:
vcrb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
124431108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
DNA_ligase_IV
RNA_ligase
BRCT_2
Tra_M
Motif
Other DBs
NCBI-GeneID:
124431108
NCBI-ProteinID:
XP_046834516
EnsemblRapid:
ENSVCRG00010007542
LinkDB
All DBs
Position
20:2330943..2335427
Genome browser
AA seq
900 aa
AA seq
DB search
MSVSLASRITFKRLCDVLEKVIKARAPEKIKILQEFILQCKKEGGKLKKDDSNANISMFP
VLRLLLPQCDRKRSSYNLKQKLLTNIYIRVLCLGKSSEDAKKLINYRIPNSSKSEGSDIS
EIIYSVVRKYLLHGKESYTIDRINIFLDNISKASQTNNSKDELFKELFRQISALELKWLT
RIILKDLKLGIGTKKILQVYHPKAGQCFDTNFNLQKLCDNFDQGKKEINYNIEVFSFFKS
MNLERSTIKDASQLFHNNHEYFVQMKFDGERSQIHMKDGIFQYFTRQGIDITNNWGYGKS
NSDGFLTSTFSRRLNRQCKSIILDGELMGWNKKKKEFGSKGMSYDVKKLTANSSYQPCFV
AYDIILYNDKLLINLPYKERLNILNDAFQDEEGSLIKCQNTIISNSKDLLDIFNKSLENN
EEGIVLKKSDFIYKPNVRNGTGCYKLKAEYSEDLVQDIDLIILGGYYGEGKFNGLINSFM
MGVAKMPEIEGKEPTQFFSVVSVCSGIAMEELTKLHSKLEKYWIKDCPNCVIKPKKHLPD
LWIRPEHSLILTLRATEIVKTDVFPIGYTLRFPRVIQIRGDKPWYSVCTNTEFLSLIKTE
GTIHKLTKRNATLNDIETIVVEKKKKITKSSSSKFEEVFYNNIQSKKNLVPITRLLYGKE
ICVINGNDEITKENIEDKLLLHNAKIVQNPSEDTYCVIVGNVKKAKARNIIQSGKYDVVT
IDWYKRIIKKENWFALESFLPWDLLCIRDFTKRSLIEKYDDYYDSYTIDANEESLERSLK
RIEHMIKNEEVVFTKEEGMDKELFENGISPFSIFKQIIGYFKKCSDSTKFKFRFMGGIIK
EDIDEHINYIFIEDNSLLSMKSSEVDETIRKSMKKIINSKWIKDCFRDQKFYSIDEYIVE
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtatcattagcttcaagaattacatttaaaagattgtgcgatgtcttagaaaaa
gttattaaagcacgtgcccctgaaaaaattaaaattctacaggaatttattttgcaatgt
aaaaaggaaggtggcaaattaaaaaaagacgattcaaatgcaaatatttcaatgtttcct
gtgttaagattgcttttaccacaatgcgatcgtaaacgttcatcatataatttgaagcag
aaattactaacaaatatttacattcgtgtactttgtcttggaaaatctagtgaagatgcc
aaaaaactgataaattatagaattcctaattcaagtaaatctgaaggaagtgacatttct
gaaataatttactcagttgtgagaaaatatttgttacatgggaaggaatcatatacaata
gatagaataaatatatttttagacaatatatcaaaagcaagtcaaacgaataatagtaaa
gatgaattatttaaagaattatttagacaaataagcgcattagaattaaaatggttgact
cgtattattttaaaggatctaaagttaggcattggaacaaaaaaaatattgcaagtttat
catccaaaagcaggtcaatgttttgatacaaatttcaacttacaaaaactttgtgataat
tttgatcaaggtaaaaaggaaattaattataatattgaagttttctcttttttcaaatct
atgaatttggaaagatctacaattaaggatgcttcacaactttttcataataatcatgag
tattttgtacaaatgaaatttgatggtgaacgttcccaaatacatatgaaagatggtata
ttccaatacttcacaagacagggaattgatatcacaaataattggggatatggaaaaagt
aattcagatggttttctcactagtacattttcgcgtcgtttaaatcgacaatgtaagtct
ataattttggatggtgaattaatgggttggaataaaaaaaaaaaagagtttggttcaaaa
ggtatgagctatgatgttaaaaagcttacagctaatagttcctatcaaccctgttttgtg
gcatatgatattattttatataatgacaaattgctcattaatttaccctataaagaaaga
ttaaatatattaaatgatgcatttcaagatgaagaaggttcattaattaaatgccaaaat
acaatcatttctaatagtaaagatttattggatatttttaataaaagtcttgaaaataat
gaagaaggaatagttttaaaaaaatctgatttcatttataaaccaaatgttcgcaatgga
actggttgctacaaattaaaagctgagtactcagaagatctagtacaagatatagactta
attattcttggaggttattatggcgaaggaaagttcaatggtttgataaacagctttatg
atgggtgttgccaaaatgcctgaaattgaaggcaaagaacctacacaatttttctctgtt
gtatcagtgtgtagtggcattgcaatggaagaattgacgaaacttcattcaaaattggag
aagtattggattaaagactgtccaaattgtgtgatcaaacccaagaaacatcttccagat
ttatggattcgacctgagcattcattgattttaacgctacgagcaacggaaatagtgaaa
actgatgtttttccgattggttatactttacgttttcctcgtgtcatacagattagagga
gataagccttggtatagtgtttgtactaacacagaatttttatcattgataaagactgaa
ggaacaattcataaattgactaaaagaaatgcaacattgaatgatattgaaacaatagtt
gttgaaaagaaaaagaaaataacaaagtcgagttcgtcaaagtttgaagaagtgttttat
aataatatacaatcaaaaaaaaatctcgtaccgatcacacgtttattgtatggaaaagaa
atttgtgttattaatggtaatgatgaaataactaaagaaaatatagaagataagctctta
ttgcataatgcgaaaatcgtacagaatccaagtgaagatacttattgtgtgatcgttgga
aatgtcaaaaaggcgaaagcgagaaacataatacaaagtggaaaatatgatgtagttacc
atagattggtataaacgtattatcaaaaaagaaaactggtttgcattagaaagtttttta
ccatgggatcttttatgcattcgcgattttaccaaacgatcacttattgaaaaatacgat
gattactatgacagttatacaatagatgctaatgaagaaagtttagaacgttctttaaaa
cggatagaacatatgataaaaaatgaagaagttgtatttaccaaagaggaaggaatggat
aaagaattgttcgaaaatggtatatccccattttctatctttaagcaaattatcggatat
tttaagaaatgttcggattcaacgaaatttaaatttcgctttatgggtggtataataaaa
gaagatatagatgaacacattaattatatcttcattgaagataattcattgttatctatg
aaatcttcggaagttgatgaaactataaggaaatctatgaaaaaaataatcaacagtaaa
tggataaaggattgttttcgggatcaaaagttttattcgatcgacgaatatattgttgaa
taa
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