Vibrio cholerae O1 El Tor MS6: MS6_1648
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Entry
MS6_1648 CDS
T03666
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vcs
Vibrio cholerae O1 El Tor MS6
Pathway
vcs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MS6_1648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcs03400
]
MS6_1648
Enzymes [BR:
vcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MS6_1648
DNA repair and recombination proteins [BR:
vcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MS6_1648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Glyco_tran_WecG
UB2H
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAP03303
LinkDB
All DBs
Position
1:1885400..1888867
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AA seq
1155 aa
AA seq
DB search
MTTHSLLSLFSAQGAGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHE
VEQFSHSEVALFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQS
PRDFLLQHTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSD
PFRIDFFDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEAR
REPESVYSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDV
DYRYDQRNIDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLP
VLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLAC
QQTEKYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLA
ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGG
AEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKA
TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL
VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS
SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI
IATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPE
ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQ
LHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGA
GELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEE
YIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKV
RKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFV
ADMLKNFQQNVLPAR
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgactacacactctttactctctctgttttcggcgcaaggtgccggagacaaaaaagcc
atcggtaatttacacggcgcaagtttagcgctggccattgcggaactcgccaatgctcat
acgagccatacgttgctcgccgtgcccgatccacaaaccgcgctcaaattgctacacgaa
gtggaacagtttagccacagcgaagtggcgctcttccccgattgggaaacgctgccctac
gataatttttcaccccatcaggacatcatttctgatcgtatttcgcgtttgtatcagctc
ccaagcttaacgcgcggtatcacgattgtcccggtcagtaccttgcttcagcgccagtca
ccacgtgactttttgttgcagcacaccttaattgttaaacgtggcgatcacttttcactg
gataaactgcgcttgcagttagaaaacagcagctatcgccatgtcgatcaggtctttggc
cccggtgaatacgccagtcgcgggtcgattcttgatctcttccctatgggcagtagcgac
ccattccggatcgatttctttgatgatgaaatcgacaccattcgcacctttgatccagac
aatcagcgctcaatcgctgaaatggatgaaattcgcctgctgcccgcccatgagtttccg
acgacggccgcggcgatcgaagagtttcgtaaccgctggcgacagcgttttgaagcgcgc
cgcgagccggaatcggtttacagccaagtctctaaaggcacttggccggcagggattgag
tattggcagccactcttttttgagcacagcgagactctgtttgattacctgcccgccaac
agccagcttttggtggttggcgagctggaaaaagccatcgaccagttcttaactgatgtc
gattaccgctacgaccaacgcaatatcgacccactgcgcccactgctgccgcccaatgag
ttgtggctgcgtaaagatgagctgtttgcccactttaaaactctgccgcaagtccaactg
acaagctcacctatcgagctgcgtgccggtcgaatgaatgcgcaagttcaaccactaccc
gtattggccgttgaacatcaaaacaaagagcctttggcggcactgcgccaatttagcgaa
caatttaccggcaaaatcattttctcagtcgagtcggaaggtcgccgtgaagcgctactg
gagttgttacagcgcattaaactgcgcccgcaaagccaaaatgatttcagccttgcgtgc
caacaaacggaaaaatactcactggtgctcggctcagcagagcgcggatttatctatggt
gataatcaagttgccttgatttgtgagagcgatttactgggcgatcgggtgattcaacgt
cgccgcaaaaaagatcgcaaaaacgtcaccaacagtgatgcggtaatccgcaaccttgcc
gagctcaaaccggggcaacccgttgtccatattgatcacgggatcggacgttacttaggc
ttacaaacccttgaagcgggtggcatggtcagcgaatacgtgatgctggagtaccaaaac
gaagccaagctgtatgtgccggtttcgtcactgaacctgatcagccgctactccggtggc
gcagaagaagccgcccaattgcataaattagggggtgaagcgtgggtcaaagcgcgccgc
aaagcggcggaaaaagtgcgcgatgtcgcggcagaacttttggatgtgtatgccaagcgt
gaaatcaaaccgggctttaaatttcatctcgaccgtgaacaatacgcgaccttcaaagcc
accttcccgtttgaagaaaccgatgaccaagcaatggcgatcaacgccgtgctatccgac
atgtgtcaagccaaagccatggatcgtttggtgtgtggtgacgtcggctttggaaaaaca
gaagtagcgatgcgcgccgcgtttgtcgcgaccgataacggcaagcaagtcgccgtatta
gttccaactacgctgctcgcccagcagcattttgaaaacttccgcgaccgctttgctaac
ttgccgatccgcgtcgaagtgctctcccgctttaaatcagccaaagagcaaaaacaaatc
ctacaagacgtagcggacggcaaagtcgacattctggtcggtacccataagttgctctct
agcgaaattcgttttgcggatcttggcttgctgattgttgacgaagaacaccgtttcgga
gtgcgccaaaaagaaaaagtcaaagcgatgcgtgccgatgtggatattctgactctcact
gccacgccaatcccacgtacactcaacatggccatgagtggtatgcgtgacctgtcgatt
attgccacacctccagcgcgccgtttagccatcaaaacctttgttcgtcaaagtgaagat
agtgtgatccgtgaagcggtactgcgtgaaattatgcgcggtggtcaggtgtactttctg
cataatcaggttgaaaccatcgataaagtggccgcagatttagaaaaactggtgcctgaa
gcgcggattaccgtcgctcacgggcagatgcgtgaacgtgagctggaaaaagtgatgaac
gatttctaccaccagcgtttcaatttgctggtgtgtaccacgatcatcgaaaccggtatc
gacgttccgaccgcgaataccatcatcatggatcgcgctgacagcttaggtttagcccag
ttgcaccagttacgtggccgcgtcggtcgttcgcatcaccaagcctatgcttacctgtta
acgccaccgcctaaagcgattaccaaagatgcggtcaaacgcctagaggcgattgcctct
ttagaagatttgggggccggctttactctcgccacgcacgacctagaaattcgcggggcc
ggtgaattgttaggcgaagagcaaagtggccagattcagtcggtcggttttactctgtat
atggaaatgctcgaacaagcggtcgaagccctaaaatcaggcaaagaacctgcgctggat
gatttactgcgtgagcagaccgaagtcgaaatgcgcctaccagccttgctgccggaagag
tacatccccgatatcaatacgcggttatccatgtacaaacagatcgccagcgtagcgagt
aaagacgaattggctgaactcaaagtcgaattgattgatcgctttggtaaattaccagac
gccgcgttaaacttactcgccattgctgaactgaaactcaatgctatgcgcctaaaagtg
cgtaaaattgaggcgcatgagcgtggcggatacgtagagttctatcccaatgctgacatt
aacccggtgtttttggttaaactgctgcaatcgcaaccaaagttactggcgatggatggg
ccaaccaaattgaaatttaccttgcctttggttgaacgcagtgcgcgcattcaatttgtc
gctgacatgttgaagaatttccagcaaaatgtactacctgctcggtaa
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