Vibrio coralliilyticus OCN014: JV59_33860
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Entry
JV59_33860 CDS
T03497
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vct
Vibrio coralliilyticus OCN014
Pathway
vct03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JV59_33860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vct03400
]
JV59_33860
Enzymes [BR:
vct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JV59_33860
DNA repair and recombination proteins [BR:
vct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JV59_33860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Glyco_tran_WecG
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AIU67279
LinkDB
All DBs
Position
1:2044415..2047876
Genome browser
AA seq
1153 aa
AA seq
DB search
MSNTSLFNLANPSGAGDKKQVGNLQGASLALAIAELANQHYSHTLLAVADPQTALKLLQE
IEQFTQQEVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPTQNSGITIVPINTLLQRQS
PRDFLMQHTLMVKVGDLYSLEKLRIQLEKSGYRHVDQVFGPGEYASRGSILDLFPMGASD
PFRIDFFDDEIDTIRTFDPENQRSIDDVKEIRLLPAHEFPTSESAIEDFRIRWRQRFEAR
REPESVYMQVSKGTWPAGIEYWQPLFFEHTETLFDYIADDSQLITVGDLEATIDHFLSDV
DYRYDQRKVDPLRPLLPPEELWLKKDELFSRFKTLPQIQLSADAVVEKQGRTNPTIQPLP
ELAVQHQNKEPMSALRQFSENFTGKIVFSVESEGRREALLELLQRIKLRPVEHESFSAAT
ESNDKFTLVLGASEHGFLFGDNQVALICESDLLGDRVIQRRRKDRKTTNSDAVIRNLAEL
KPGQPVVHIDHGIGRYIGLQTLEAGGMTTEYVTLEYQNDAKLYVPVAALNLISRYSGGAE
ESAPLHKLGGEAWAKARRRAAEKVRDVAAELLDVYAKRELKPGYKFALDRDQYATFKAGF
PFEETDDQSMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATDNGKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQVLQDIEDGKVDLVVGTHKLLSND
IKFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQRDDAVVREAVLREIMRGGQIYFLHNQVETIEKVAADLEKLIPEAR
VTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLEELLREQTEVEMRLPALLPDDYI
PDINTRLSMYKQIASVSDKAELDDLKIELIDRFGLLPDATKNLLSVSEMKLEAGSLKVKK
IEAHDKGGFIEFYPDADINPMYLVKLLQSQPQKFAMEGPTKFKFTVPLVDRRKRIQFVGD
MLGEFQQNLLPQA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatacatcgctttttaatctggctaacccatccggagccggagacaaaaaacag
gtcggcaatctacaaggggcaagtttagcccttgcgattgctgaactggctaatcaacat
tatagtcataccctgctcgctgttgctgacccgcaaacagccttaaaactgttacaagaa
atcgagcagtttactcagcaggaagtttcccttttccctgactgggaaaccttgccgtac
gataacttttctcctcaccaggagatcatttcggatcgtatcgcgcgtttgtaccagctc
ccgacacaaaacagtgggattaccatcgttcccatcaacacattgctccaaagacagtct
cctagagacttcctgatgcagcataccttgatggtcaaagtcggcgacctttactcgttg
gaaaagctgcgtattcagttggagaaatccggataccgacacgtagatcaagtctttgga
cctggagaatatgccagccgcggttccatcttagacctctttcctatgggggccagtgac
ccattccgcatcgatttcttcgatgatgaaattgatacgattcgtacttttgacccagaa
aaccaacgttcaattgacgatgtaaaggagatcaggctgctgccagctcatgaattcccg
acttcagagagtgcgattgaagacttcaggatccgctggcgtcagagattcgaagccaga
cgtgagcccgagtccgtttacatgcaggtgtctaaaggaacttggcctgcgggtattgag
tactggcaaccgctgttttttgagcacaccgaaaccttgtttgactacattgccgatgac
agccaattaatcacggtcggtgatttagaagcaaccatcgaccacttcctcagtgatgtc
gactaccgatacgaccaacgcaaagtggatccactgagacctctgttgccgccagaagaa
ttgtggctcaagaaagatgagctctttagtcgctttaaaacgctgcctcaaatacaactt
tctgccgatgcggttgtggaaaaacaagggcgtactaacccaactattcaaccattacca
gaattggctgttcagcaccaaaacaaggaaccgatgtcggcgctacgccagtttagtgaa
aacttcactggtaaaatcgttttctccgtcgaatctgaaggccgccgcgaagcactcctt
gaactgctgcaacgcataaagcttcgaccggtcgaacacgaaagtttctctgccgcgaca
gaaagcaacgataaattcaccttagtactgggcgcctctgagcatggattcctatttggc
gataatcaggttgctttgatatgcgaaagtgacttacttggtgaccgagttatccagcgt
cgccgtaaagatcgcaaaactacaaacagtgatgccgtcatacgcaaccttgccgagctt
aagcccggtcagcctgtcgttcacatcgaccacggtatcggccgctacatcgggctgcaa
acgctggaagcaggtggaatgacaaccgaatacgtcacactggaataccaaaatgacgcc
aagctctacgtaccggttgcggcattaaacttgatcagtcgttactccggtggcgcagaa
gagtccgctccactgcataaactgggtggcgaagcttgggcgaaagcgcgtcgcagagcc
gctgaaaaagtgcgtgatgtggcagcagagctacttgatgtttacgcgaaacgagagctt
aagccgggttataagtttgcccttgaccgtgaccagtacgccactttcaaagccgggttc
cctttcgaagaaaccgatgatcagtccatggcgatcaacgcggttatgtccgatatgtgc
caagccaaagcgatggatcgcctagtgtgtggtgatgtgggttttggtaaaaccgaagtg
gcgatgcgtgctgcttttctcgctacggacaacggcaagcaagtggctgtcttagttcct
accacactacttgcccagcaacactttgaaaatttcagagaccgctttgccaacttgccg
attcgagtcgaagtactgtcacgcttcaaaacagctaaggaacaaaagcaagtactgcaa
gatatcgaagacggcaaagtcgatttggtggtcggtactcataagctgctttctaacgac
atcaaattcaaagatcttggcttgttgattgtcgatgaagaacaccgctttggtgtaaga
caaaaagagaaaatgaaagcgatgcgcgcagacgttgatattctgacgttaacagcaacg
cctattccaagaacgctaaatatggcgatgagtgggatgcgcgatttatcgatcatcgca
acaccaccagcaagacgactggcgattaaaacttttgttcgtcaacgcgatgatgccgtt
gtaagagaagccgtgctgcgtgaaatcatgcgtggtgggcagatatacttcttgcataac
caagttgaaacaattgaaaaagtcgctgcggacttagaaaaactcattcctgaagcacgc
gttaccgtagcgcatgggcagatgcgcgaacgtgaacttgagcgcatcatgaatgacttc
tatcatcagcgatttaatctgttggtatgtacgaccattattgaaaccggtatcgatgtt
ccgaccgccaacaccatcattatggatagagccgataacctcggtctggcgcagttgcac
cagttacgcggtcgtgttggtcgttctcaccaccaggcatacgcctacttactcacacct
caccctaaagccatgactaaagatgccattaagcgtctagatgcgattgcatcactggaa
gatttaggtgcaggttttacactcgccactcacgatctcgaaatccgtggtgcaggtgag
ctgttgggggatgaacaaagcgggcaaattcaatctgtcggttttacgctgtatatggag
atgctggagcaggctgttgaagcgctgaaagaagggaaagagccttctttagaagagtta
ctcagagaacaaactgaggtagaaatgcgtctacctgcccttctgccagatgactatatt
ccagatatcaacacgcgcttatctatgtataagcagattgcgagcgtatcagacaaagcc
gaactggacgaccttaagattgaattgattgaccgctttggactattgccagatgcaacc
aagaatctcctttctgtatcagaaatgaaacttgaagctggttctctaaaagtgaagaaa
atcgaagcccacgacaaaggtggattcatcgagttctatccggacgctgacattaatcca
atgtatttggttaaactattgcagtctcagccacaaaaattcgcgatggaaggcccaact
aagttcaagtttacggtaccattggtcgacagacgtaagagaattcaatttgttggtgat
atgttgggcgagttccagcagaaccttttaccacaagcctga
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