Candidatus Vallotia cooleyia: GJV44_00584
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Entry
GJV44_00584 CDS
T07928
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vcv
Candidatus Vallotia cooleyia
Pathway
vcv03410
Base excision repair
vcv03430
Mismatch repair
vcv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vcv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GJV44_00584 (recJ)
03430 Mismatch repair
GJV44_00584 (recJ)
03440 Homologous recombination
GJV44_00584 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcv03400
]
GJV44_00584 (recJ)
DNA repair and recombination proteins [BR:
vcv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GJV44_00584 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GJV44_00584 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GJV44_00584 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF919
Motif
Other DBs
NCBI-ProteinID:
UDG82323
LinkDB
All DBs
Position
762998..764716
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AA seq
572 aa
AA seq
DB search
MIRIVTRVCPSNDVHALMLHGIHPVLARLYASRGVGSPADVETTMERLLPPAQLLGARAA
AELLSQAIVSKWRILVVADYDCDGATACAVAVRGLRLFGADINYLVPNRFKYGHGLTPDI
VDLVAHRPVGCPDLLLTVDNGIASLDGVAAANELGIDVLITDHHLAGDTLPAARVIVNPN
QPGCAFPSKHLAGVGVIFYVLLALRALLREHGTFNNRPEPRLSSLLDLVALGTVADVVRL
DANNRLLVAQGLNRIRNGKMQPGIAALFRVAACNVAHTSVFDLGFTLGPRLNAGGRLSDM
SLGIECLVTDDPYRANELAQQLNTMNRQRRAIEVEMHKQALAGLTKLNLSDAATVTLFNP
AWHQGVIGVVASRLKERFYRPTITFALADKSRECVKGSGRSIPGFHLRDALDLLSKRDPG
LIEHFGGHAMAAGLTLRTKNISRFASAFEAIARQCLNKDALTRQIETDGELEDTYHTLSF
VQLMDGVVWGQGFPAPVFSGIFDVLSQSTVGERHLKLQLARGRLRYSAIWFNHVEILPER
ARFAYRLMRDTWNGASRVQLVIEHAYHDVEPL
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgatccgaattgtcacccgagtctgcccatccaacgacgtgcatgcccttatgctgcat
ggcatccatccagtacttgcaaggttatatgcatcgcgcggcgtcggttcgcctgccgac
gtggaaaccacgatggagcgacttctcccgccagcacagctattaggcgcccgcgctgca
gctgagcttctgtcccaagccattgtctcgaaatggcggatcctagtggtagccgactat
gattgtgatggcgcaactgcatgcgcggtagctgtgcgcggcctacgtctgtttggcgcg
gacattaactatctagtgccgaaccgatttaaatacggccatggactcactccagacatc
gtggatctagtcgcccaccgtcctgtcggctgccctgacctgctacttactgttgacaac
ggaatcgccagcttagacggcgtagcagctgctaacgagctgggcattgatgtactgatt
acggatcaccacttagccggcgatacactaccagctgcacgagtaatcgttaatccaaat
caacctggctgtgcattcccgagcaagcatctagctggcgtcggtgtaatattttatgta
ctactagcactgcgcgcgcttttgcgcgagcacggaactttcaacaatcgtcccgagcca
aggctcagcagcttgctcgatttagtcgcgttaggcacagtagctgacgtcgtgcgtcta
gatgcaaataatcgcttactagttgcacagggcctgaatcgcatccgaaacggtaagatg
cagccaggtattgccgcacttttccgagtggcagcctgtaatgtggctcatacgtctgta
ttcgacctagggtttacattaggaccccgactaaatgcgggagggcggctttccgatatg
tcgcttggcatcgaatgcctagtcaccgacgatccttatcgtgctaatgagctagctcag
caacttaatacaatgaaccgacagcgtcgtgcaatcgaagtggaaatgcataagcaagcg
ttagctggacttactaagcttaatttaagcgatgcggccactgttacgctctttaacccg
gcgtggcaccagggggtaattggtgtcgtcgccagccgacttaaagagcgtttctatcga
ccaacgattacgtttgcgctagccgataagtcgagggagtgtgtgaaaggctctggacgc
tcgatcccgggctttcacttacgcgatgcgctagaccttctctctaagcgggatcctgga
ttaatagagcactttggtggccacgcgatggccgccggtcttacgctgcggactaagaat
atatcgcgttttgcgtcagcatttgaggcgatagctcgccaatgtctaaacaaggacgca
ctcacacgacagatcgagacggacggagagctagaagacacgtatcacacgctatccttt
gttcagttgatggacggcgtagtatggggccaaggtttcccggcaccagttttttcgggg
atattcgacgtgctatcgcagtcaactgtcggggagcgacacctgaagttacagcttgcc
cgtggtcgccttcgatattcagctatttggtttaatcatgtcgagatacttccggaacgg
gcgcgatttgcctaccggcttatgcgtgatacctggaatggtgcatcgcgtgtacagtta
gtcatcgagcatgcgtaccatgatgtcgagccactgtaa
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