Venatoribacter cucullus: GJQ55_09950
Help
Entry
GJQ55_09950 CDS
T07641
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vcw
Venatoribacter cucullus
Pathway
vcw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJQ55_09950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcw03019
]
GJQ55_09950
03009 Ribosome biogenesis [BR:
vcw03009
]
GJQ55_09950
Enzymes [BR:
vcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GJQ55_09950
Messenger RNA biogenesis [BR:
vcw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GJQ55_09950
Ribosome biogenesis [BR:
vcw03009
]
Prokaryotic type
rRNA helicases
GJQ55_09950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
AAA_30
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QQD24765
UniProt:
A0A9X7YNJ5
LinkDB
All DBs
Position
complement(2109908..2111836)
Genome browser
AA seq
642 aa
AA seq
DB search
MTDSTPTGFASLGLPFPILRVLDELGYEAPSPIQAESIPSLLEGRDVLGMAQTGTGKTAA
FALPLLTRTQVDFNSPQVLCLAPTRELAQQVAEAVKTYSKYMPGINVTAIYGGSDYGSQL
RDLKRGPQWVVGTPGRVMDHLRRGTLQLADIRAVVLDEADEMLRMGFIDDVNWILEHTPR
SRQVALFSATMPREIQNVAETHLKDPVQVKIQTKTTTNDKIRQRYWFVGGAHKNDALLRI
AETEEFDAMMVFVRTKQATEEVADFMQANGFKCSPLNGDIPQALREKAVEKLKSGQLDII
VATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRNGEAIVFVRGREKRMLRD
IEKATRQPIEEMPLPSAKQVNEKRREKFQAQILDAMHSERNQPYREMIEAILAQNPVDAL
DVAAAMASLLQGDKQLFINEQQDARMLEARERESRNEARNESRGERGDRRERDSRERFDR
APRAAAKAAPESRPKPLKGHPEVEMVRFMVNVGYNDGLKPGNLVGAVANEADLDSEYIGH
IEIMENFAVVDLPNGMPAPVMNKLKKARVCGRPLEIRPYSESEIPAAGGTTRPVRSRNEG
FNRDRAPREAGNRDFAKKSYRAKPRADGAAPAARAPRKAREG
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgactgactctactccgactggcttcgccagccttggcttgccgttccctattctccgc
gttctggacgaactgggctacgaagcaccttcccccattcaggctgaaagcattccttcc
ttgctggaaggccgtgacgtactgggcatggctcagaccggcaccggtaaaaccgccgcc
ttcgcgctgccgctgctgacccgtacccaggtggatttcaattccccgcaggtgctctgt
ctggcgccgacccgtgaactggcccagcaggttgctgaagcggtaaaaacctacagcaaa
tacatgcctggcattaacgtcactgctatttacggcggttctgactacggttcacagctg
cgtgatctgaagcgcggtccgcagtgggttgtgggcacaccgggccgggtaatggatcac
ctgcgtcgtggcacgctgcagctggcggatatccgcgcggtggtgctggacgaagccgac
gaaatgctgcgcatgggctttatcgacgatgtgaactggattctggaacacactccgcgc
tcgcgtcaggtggcgttgttctcggcgaccatgccgcgtgaaattcagaatgtggctgaa
acccatctgaaagatccggtacaggtaaaaattcagaccaaaaccaccaccaacgacaaa
atccgtcagcgttactggtttgtgggcggcgcgcataaaaatgatgcgctgctgcgcatt
gctgaaaccgaagaattcgatgccatgatggtgtttgtacgcaccaaacaggccaccgaa
gaagtcgctgattttatgcaggccaacggtttcaaatgttcgccgctgaacggtgatatt
ccgcaggctctgcgcgaaaaagccgtggaaaaactaaagtccggccagctcgatattatt
gtggccaccgatgtagccgcccgtggtctggacgttgagcgtatcagccacgtgattaac
tacgatattccgtctgacacggaatcttacgtacaccgtatcggccgtaccggtcgtgct
ggtcgtaacggtgaggccattgtgtttgtgcgtggccgcgaaaaacgcatgctgcgcgac
attgaaaaagccacccgccagccaattgaagaaatgccgctgccgagtgctaagcaggtt
aacgaaaaacgccgcgagaaatttcaggcgcagattctggatgccatgcattccgagcgt
aaccagccgtaccgtgaaatgattgaagccattctggcgcaaaatccggtcgatgcgctg
gacgttgctgccgccatggcctcattgctgcagggtgacaaacagttgtttattaacgaa
caacaggatgcccgcatgctggaagcgcgtgagcgcgaaagccgtaatgaagcccgcaac
gaatcccgtggtgaacggggtgaccgtcgtgagcgtgacagccgtgagcgttttgaccgt
gccccgcgtgccgctgccaaagccgccccggagagccgtccgaagccgttaaaaggccat
ccggaagttgaaatggtgcgctttatggtgaacgttggttacaacgacggcctcaagccg
ggtaacctggttggcgccgtggctaacgaagcggatctcgacagcgaatacattggccat
atcgaaattatggaaaactttgccgtggttgacctgcccaatggcatgccggcaccggtg
atgaacaaattgaaaaaagcccgcgtgtgtggccggccgctggaaatccgtccgtacagc
gaaagcgaaattccggctgctggtggcaccacccgtccggtacgcagccgtaacgaaggc
tttaaccgcgatcgtgctccgcgcgaggctggtaaccgcgatttcgccaaaaaatcctat
cgtgccaagccgcgtgccgatggtgcagctccggctgcccgggccccgcgtaaagcccgc
gaaggctga
DBGET
integrated database retrieval system
