Vibrio coralliilyticus RE98: IX92_04885
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Entry
IX92_04885 CDS
T03444
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vcy
Vibrio coralliilyticus RE98
Pathway
vcy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IX92_04885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcy03400
]
IX92_04885
Enzymes [BR:
vcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IX92_04885
DNA repair and recombination proteins [BR:
vcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IX92_04885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Glyco_tran_WecG
UB2H
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AIW18415
UniProt:
A0A7Y3YXI9
LinkDB
All DBs
Position
1:complement(1095377..1098838)
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AA seq
1153 aa
AA seq
DB search
MSNTSLFNLANPSGAGDKKQVGNLQGASLALAIAELANQHSSHTLLAVADPQTALKLLQE
IEQFTQQEVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPTQNSGITIVPINTLLQRQS
PRDFLMQHTLMVKVGDLYSLEKLRIQLEKSGYRHVDQVFGPGEYASRGSILDLFPMGASD
PFRIDFFDDEIDTIRTFDPENQRSIDDVKEIRLLPAHEFPTSESAIEDFRIRWRQRFEAR
REPESVYMQVSKGTWPAGIEYWQPLFFEHTETLFDYIADDSQLITVGDLEAAIDHFLSDV
DYRYDQRKVDPLRPLLPPEELWLKKDELFSLFKTLPQIQLSADAVVEKQGRTNPTIQPLP
ELAVQHQNKEPMSALRQFSENFTGKIVFSVESEGRREALLELLQRIKLRPVEHESFSAAT
ESNDKFTLVLGASEHGFLFGDNQVALICESDLLGDRVIQRRRKDRKTTNSDAVIRNLAEL
KPGQPVVHIDHGIGRYIGLQTLEAGGMTTEYVTLEYQNDAKLYVPVAALNLISRYSGGAE
ESAPLHKLGGEAWAKARRRAAEKVRDVAAELLDVYAKRELKPGYKFALDRDQYATFKAGF
PFEETDDQSMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFLATDNGKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQVLQDIEDGKVDLVVGTHKLLSND
IKFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQRDDAVVREAVLREIMRGGQIYFLHNQVETIEKVAADLEKLIPEAR
ITVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDELLREQTEVEMRLPALLPDDYI
PDINTRLSMYKQIASVSDKAELDDLKIELIDRFGLLPDATKNLLSISEMKLEAGSLKVKK
IEAHDKGGFIEFYPDADINPMYLVKLLQSQPQKFAMEGPTKFKFTVPLVDRRKRIQFVGD
MLGEFQQNLLPQA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatacatcgctttttaatctggctaacccatccggagccggagacaaaaaacag
gtcggcaatctacaaggggcaagtttagcccttgcgattgctgaacttgctaatcaacat
tctagccataccctgctcgctgttgctgacccgcaaacagccttaaaactgttacaagaa
atcgagcagtttactcagcaggaagtttcccttttccctgactgggaaaccttgccgtac
gataacttttctcctcaccaggagatcatttcggatcgtatcgcacgtttgtaccagctc
ccgacacaaaacagtgggattaccatcgttcccatcaacacattgctccaaagacagtct
cctagagacttcctgatgcagcataccttgatggtcaaagtcggcgatctttactcgttg
gaaaagctgcgtattcagttggagaaatccggataccgacacgttgatcaagtcttcggg
cctggcgaatatgccagccgcggttccatcttagacctctttcctatgggggccagtgac
ccattccgcatcgatttcttcgatgatgaaattgatacgattcgtacttttgacccagaa
aaccaacgttcaattgacgatgtaaaggagatcaggctgctgccagctcatgaattcccg
acttcagagagtgcgattgaagacttcaggatccgctggcgtcagagattcgaagccaga
cgtgagcctgagtccgtttacatgcaggtgtctaaaggaacttggcctgcgggtattgag
tactggcaaccgctgttttttgagcacaccgaaaccttgtttgactacattgccgatgac
agccaattaatcacggtcggtgatttagaagcagccatcgaccacttcctcagtgatgtc
gactaccgatacgaccaacgcaaagtggatccactgagacctctgttgccgccagaagaa
ttgtggctgaagaaagatgagctctttagtctctttaaaacgctgcctcaaatacaactt
tctgctgatgcggttgtggaaaaacaagggcgtactaacccaactattcaaccattacca
gaattggctgttcagcaccaaaacaaggaaccgatgtcggcgctacgccagtttagtgaa
aacttcactggtaaaatcgttttctccgtcgaatctgaaggccgccgcgaagcactcctt
gaactgctgcaacgcataaagcttcgaccggtcgaacacgaaagtttctctgccgcgaca
gaaagcaacgataaattcaccttagtactgggcgcctctgagcatggattcctatttggc
gataatcaggttgctttgatatgcgaaagtgacttacttggtgaccgagttatccagcgc
cgccgtaaagatcgcaaaactacaaacagtgatgccgtcatacgcaaccttgccgagctt
aagcccggtcagcctgtcgttcacatcgaccacggtatcggccgctacatcgggctgcaa
acgctggaagcaggtggaatgacaaccgaatacgtcacactggaataccaaaatgacgcc
aagctctacgtaccggttgcggcattaaacttgatcagtcgttactccggtggcgcagaa
gagtccgctccactgcataaactgggtggcgaagcttgggcgaaagcgcgtcgcagagcc
gctgaaaaagtgcgtgatgtggcagcagagctacttgatgtttacgcgaaacgagagctt
aaaccgggttataagtttgcccttgatcgtgaccagtacgccactttcaaagccgggttc
cctttcgaagaaaccgatgatcagtccatggcgatcaacgcggttatgtccgatatgtgc
caagccaaagcgatggatcgtctagtatgtggtgatgtaggctttggtaaaaccgaagtg
gccatgcgtgctgcctttcttgctacggacaacggtaagcaagtggctgtcttagtccca
acaacactacttgcccagcaacactttgaaaacttcagagaccgctttgctaacttgccg
attcgagtcgaagtactgtcacgtttcaaaacagcgaaggagcaaaagcaagtactgcaa
gatatcgaagacggcaaagtcgatttagtggttggtacacataagctgctttctaacgac
atcaaattcaaagatcttggcttgttgattgtcgatgaagaacaccgctttggtgtacga
caaaaagagaaaatgaaagcgatgcgcgcagacgttgatattctgacgttaacagcaacg
cctattccaagaacgctaaatatggcgatgagtgggatgcgcgatttatcgatcattgca
acaccaccagcaagacgactagcgattaaaacctttgttcgtcaacgcgatgatgccgtt
gtaagagaagccgtgctacgtgagatcatgcgtggtgggcagatatacttcttgcataac
caagttgaaaccatcgaaaaagtcgctgctgatttagagaagctcattcctgaagcgcgc
attaccgtggctcacggccagatgcgcgaacgtgaacttgagcgcatcatgaatgacttc
taccatcagcgatttaatctgttggtatgtacgaccattattgaaaccggtatcgatgtt
ccgaccgccaacaccatcattatggatagagccgataacctcggtctggcgcagttgcac
cagttacgcggtcgtgttggtcgttctcaccaccaggcatacgcctacttactcacacct
caccctaaagccatgactaaggatgccattaagcgtctagacgcgattgcatcactggaa
gatttaggagcaggctttacactcgccactcacgaccttgaaattcgtggtgcgggtgag
ctgcttggtgatgaacaaagcgggcaaattcaatctgtcggttttacgctgtatatggag
atgctcgaacaggctgttgaagcgctgaaagaagggaaagagccttctttagacgaatta
ctcagagaacaaactgaggtagaaatgcgtctacctgcccttctgccagatgactatatt
ccagatatcaacacgcgcttatctatgtataagcagattgcgagcgtatcagacaaagcc
gaactggacgatcttaagattgaactgattgaccgctttggactattgccagatgcaacc
aagaatctcctttctatatcagaaatgaaacttgaagctggttctctaaaagtgaagaaa
atcgaagcccacgacaaaggtggattcatcgagttctatccggacgctgacattaatcca
atgtatttggttaaactattgcaatctcagccacaaaaattcgcgatggaaggcccaact
aagttcaagtttacggtaccattggtcgacagacgtaagagaattcaatttgttggtgat
atgttgggcgagttccagcagaaccttttaccacaagcctga
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