Vibrio cholerae O27 10432-62: VAB027_2530
Help
Entry
VAB027_2530 CDS
T03829
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vcz
Vibrio cholerae O27 10432-62
Pathway
vcz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vcz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VAB027_2530 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vcz03400
]
VAB027_2530 (mfd)
Enzymes [BR:
vcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VAB027_2530 (mfd)
DNA repair and recombination proteins [BR:
vcz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VAB027_2530 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AKB06246
LinkDB
All DBs
Position
2754393..2757860
Genome browser
AA seq
1155 aa
AA seq
DB search
MTTHSLLSLFSAQGAGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHE
VEQFSHSEVALFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQS
PRDFLLQHTLIVKRGDHFSLDKLRLQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD
PFRIDFFDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEAR
REPESVYSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDV
DYRYDQRNIDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLP
VLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLAC
QQTEKYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLA
ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGG
AEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKA
TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL
VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS
SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI
IATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPE
ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIIDRADSLGLAQ
LHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGA
GELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEE
YIPDINTRLSMYKQIASVASEDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKV
RKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFV
ADMLKNFQQNVLPAR
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgactacacactctttactctctctgttttcggcgcaaggtgccggagacaaaaaagcc
atcggtaatttacacggcgcaagtttagcgctggccattgcggaactcgccaatgctcat
acgagccatactttgctcgccgtgcccgatccacaaaccgcgctcaaattgctacacgaa
gtggaacagtttagccacagcgaagtggcgctcttccccgattgggaaacgctgccctac
gataatttttcaccccatcaggacatcatttctgatcgtatttcgcgtttgtatcagctc
ccaagcttaacgcgcggtatcacgattgtcccggtcagtaccttgcttcagcgccagtca
ccacgtgactttttgttgcagcacaccttaatcgttaaacgtggcgatcacttttcactg
gataaactgcgcttgcagttagaaaacagcggctatcgccatgtcgatcaggtctttggc
cccggtgaatacgccagtcgcgggtcgattcttgatctcttcccgatgggcagtagcgac
ccattccggatcgatttctttgatgatgaaatcgacaccattcgcacctttgatccagat
aatcaacgctcaatcgctgaaatggatgaaattcgcctgctgcccgcccatgagtttccg
acgactgccgcggcgatcgaagagtttcgtaaccgctggcgacagcgttttgaagcgcgc
cgtgagccggaatcggtttacagccaagtctctaaaggcacttggcccgcagggattgag
tattggcagccactcttttttgagcacagcgagaccctgtttgattacctgcccgccaac
agccagcttttggtggtgggcgagctggaaaaagccatcgaccagttcttgaccgatgtc
gattatcgctacgaccaacgcaatatcgacccactgcgcccactgctgccgcccaatgag
ttgtggctgcgtaaagatgagctgtttgcccactttaaaactctgccgcaagtccaactg
acaagctcacctatcgagctgcgtgccggtcgaatgaatgcgcaagttcaacccctaccc
gtattggccgttgagcatcaaaacaaagagcctttggcggcactgcgccaatttagtgaa
caatttaccggcaaaatcattttctcagtcgagtcggaaggtcgccgtgaagcgctactg
gagttgttacagcgcattaaactgcgcccgcaaagccaaaatgatttcagccttgcgtgc
caacaaacggaaaaatactcactggtgctcggctcagcagagcgcggatttatctatggt
gataaccaagttgccttgatttgtgagagcgatttactgggcgatcgggtgattcaacgt
cgccgcaaaaaagatcgcaaaaacgtcaccaacagtgatgcggtgatccgcaaccttgcc
gaactcaaaccggggcaacccgttgtccatattgatcatggtatcggccgctacttaggc
ttacaaactcttgaagcgggtggtatggtcagcgaatacgtgatgctggagtaccaaaac
gaagccaagttgtatgtaccggtttcgtcactgaacctgatcagccgctactccggtggc
gcagaagaagccgcccaattgcataaattagggggtgaagcgtgggtcaaagcgcgccgc
aaagcggcggaaaaagtgcgcgatgtcgcggcagaacttttggatgtgtatgccaagcgc
gaaatcaaaccgggctttaaattccatctcgaccgtgaacaatacgctaccttcaaagcc
accttcccgtttgaagaaaccgatgaccaagcaatggcgattaatgctgtgctatccgac
atgtgtcaagccaaagccatggatcgtttggtgtgtggtgacgtaggctttggtaaaacc
gaagtagcaatgcgcgccgcgtttgtcgcgaccgataatggcaagcaagtcgccgtgtta
gtccctacaactctactggcgcagcagcattttgaaaatttccgcgaccgctttgctaac
ttgccgatccgcgtcgaagtgctctcccgctttaaatcagccaaagagcaaaaacaaatc
ctacaagatgtagcggacggcaaagtcgacattctggtcggtacccataagttgctctct
agcgaaattcgttttgcggatcttggcttgctgattgttgacgaagaacaccgtttcggg
gtgcgccaaaaagaaaaagtcaaagcgatgcgtgccgatgtggatattctgactctcact
gccacaccaatcccacgtacactcaacatggccatgagtggtatgcgtgacctgtcgatt
attgccacccctccagcgcgccgtttagccatcaaaacctttgttcgtcaaagtgaagat
agtgtgatccgtgaagcggtactgcgtgaaattatgcgcggtggtcaggtgtactttctg
cataatcaggttgaaaccatcgataaagtggccgcagatttagaaaaactggtgcctgaa
gcgcggattaccgtcgctcacgggcagatgcgtgaacgtgagctggaaaaagtgatgaac
gatttctaccaccagcgtttcaatttgctggtgtgtaccacgatcatcgaaaccggtatc
gacgttccgaccgcgaataccatcatcattgatcgcgcagacagcttaggtttagcccag
ttgcaccagttacgtggccgcgtcggtcgttcgcatcaccaagcctatgcttacctgtta
acgccaccgcctaaagcgattaccaaagatgcggtcaaacgcctagaggcgattgcctct
ctagaagatttgggggctggctttactcttgccacgcacgacctagaaattcgcggggcc
ggtgaattgttaggcgaagagcaaagtggccagattcagtcggtcggttttactctgtat
atggaaatgctcgaacaagcggtcgaagccctaaaatcaggcaaagaacctgcgctggat
gatttactgcgtgagcagaccgaagtcgaaatgcgcctaccagccttgctgccggaagag
tatatccccgatatcaatacgcggttatccatgtacaaacagatcgccagcgtagcgagt
gaagacgaattggctgaactcaaagtcgaattgattgatcgctttggtaaattaccggac
gccgcgttaaacttactcgccattgctgaactgaaactcaatgctatgcgcctaaaagtg
cgtaaaattgaggcgcatgagcgtggcggatacgtagagttctatcccaatgctgacatt
aacccggtgtttttggttaaactgctgcaatcgcaaccaaagttactggcgatggatgga
ccaaccaaattgaaatttaccttgcctttggttgaacgcagcgcgcgcattcaatttgtc
gctgacatgttgaagaatttccagcaaaatgtactacctgctcggtaa
DBGET
integrated database retrieval system
