Verticillium dahliae: VDAG_00276 Help Entry VDAG_00276        CDS       T03450                                  Name (RefSeq) ATP-dependent helicase NAM7   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism vda  Verticillium dahliae Pathway vda03013   Nucleocytoplasmic transport vda03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:vda00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     VDAG_00276    03015 mRNA surveillance pathway     VDAG_00276  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:vda03019]     VDAG_00276 Enzymes [BR:vda01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      VDAG_00276     5.6.2.5  RNA 5'-3' helicase      VDAG_00276 Messenger RNA biogenesis [BR:vda03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      VDAG_00276    mRNA cycle factors     Common to processing body (P body) and stress granule      VDAG_00276 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD PIF1 SLFN-g3_helicase UvrD-helicase Helicase_RecD AAA_16 nSTAND3 ATPase AAA_22 SRP54 PhoH Motif Other DBs NCBI-GeneID:  20701739 NCBI-ProteinID:  XP_009649948 UniProt:  G2WRU3 LinkDB All DBs Position 2 AA seq 1099 aa AA seqDB search MEGAFTHLGNHLISDSAAAIKAGADDLSTIDADESLLYGGKFGGRGGRRRADDDDNQTEL YDEEDNDSLTSAPVGALQDLKLGHAQEEERELPAHACSYCGIHSPSSVVKCLGCNKWFCS ARGNTTSSHIVNHLVRARHREVQLHPESTLGDTILECYNCGSKNVFLLGFIPAKADTVVV LLCRQPCAASTSSKDMSWDISRWQPLIEERAFLPWLVATPSDAEQLRARHLTPNVMAKLE ELWKEDMTATVADLDKATSIDDDPHPVLLKYEDPFQYQNVFGPLVKMESDYDKKLKEAQS EDGLQIRWDYGLNGKHLASFELHKIESGDVKLAVGDEMRLRYKGELRPAWEGVGYVIKIP NNHSDEVTLELRKAGNEKTVPTECTHNFSADYVWKATSYDRMQLAMKTFAVDDNSVSGFI VHKLLGRDVAVAPMKTAMPKKFTAPGLPDLNQSQISAIKAVLQTPLSLIQGPPGTGKTVT SATIIYHLAKSSGGQVLVCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVESSVSFLAL HEQVRMNDSNGELVKLAQLKTELGELSSQDEKKFKQLTKAAERDILHNADVVCCTCVGAG DPRLSKIKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLN QSLFERLVNLRLQPIRLNTQYRMHPCLSEFPSNMFYDGSLQNGVTHAQRLRRDVDFPWPV ADTPMMFWSNLGNEEISASGTSYLNRTEASNVEKVVTRFFKAGVKPQDIGVITPYEGQRS YIVSTMQNTGTFKKESYKEVEVASVDAFQGREKDFIVLSCVRSSDNQGIGFLSDPRRLNV GLTRAKYGLVILGNPKVLSKHELWHHLLVHFKDRKCLVEGPLTNPAKAPLPPVWQTPRRP SRQKFNQPNQYAAGGYSSGNGNSNGSRYGPPGGSVRDFDTGSVVSYIPDDVSSIHSSSLG GAGLNTTYPQFFSGFGHETWPGLPGAPTGRSGNRRAARGTESIAGESVANSEYTDASASV IGAKGVGQGGVSLGAGLQDAIHGMRPASYSRSDRLTQYVNSTSGNRNGPGNGYGRRFDKD DDEKSVSTAFHSQIGGGFD NT seq 3300 nt NT seq  +upstreamnt  +downstreamnt atggagggtgcctttactcacctcggaaaccacttgatctccgattccgctgctgcgatc aaggccggcgccgacgacctctcgactatcgatgcggacgagagcctcctctatggtggc aagtttgggggccgcggcggacgacgccgcgccgatgacgacgacaaccagactgagcta tatgacgaggaggacaatgacagtctgacgagcgcacccgttggcgctttgcaagacttg aagctcggtcacgctcaggaggaggaaagagagctgcctgcccatgcctgctcgtactgc ggcatccattccccgagctccgttgtcaaatgccttggctgcaacaagtggttttgcagt gctcgcggcaacacgacctccagccacatcgtcaaccatctcgttcgcgctcgccaccga gaagtccagcttcaccctgaatcgacccttggcgacactatccttgagtgctacaactgc ggaagcaaaaacgtcttcctgctgggattcatccctgccaaagccgacaccgttgtcgtt cttctctgccgacagccatgcgccgccagcacttcctcaaaggacatgagctgggacatc tcgcgatggcagcccttgattgaggaacgcgccttcctcccgtggctggtcgcaacgccc tcagacgccgagcagctgcgcgctcgtcacttgaccccgaatgtcatggccaagctcgag gaactgtggaaagaggatatgacggcaacggtggccgatttggacaaggcgaccagtatt gatgacgaccctcatcctgtcctgctcaagtacgaagacccgtttcagtaccagaatgtt tttggccctctggtcaagatggagtccgactacgacaagaagctcaaggaagcgcaatcg gaggacggccttcagattcgctgggactacggcctgaacggcaagcatcttgcaagcttc gagcttcacaagatagagtccggcgatgtgaagctagctgttggtgacgagatgcgactc cgctacaagggagagcttcgcccagcctgggaaggcgttggctacgtgatcaagatcccc aacaatcactccgacgaggtcactctggagctgcgtaaggccggtaacgagaagacggtc ccaactgagtgcacccacaacttttcggccgattatgtgtggaaagcgacttcatatgac cgcatgcagctcgccatgaagactttcgctgttgatgacaacagtgtctcgggctttatc gttcacaagctgcttggacgtgacgttgcggtcgcgcccatgaagacggccatgcctaag aagtttaccgctcctggacttcccgacctcaaccagtcccagatttctgccataaaggcg gtcctccagacgcctctgagtcttatccaggggcccccgggcactggcaagaccgtcacg tcggcgaccatcatctaccacctcgctaagagcagtggaggacaggtcctcgtctgtgcg ccttctaacgttgccgtcgatcaactttgcgaacgtatccaccgcacagggctcaaggtc gtgcgcttgacagccaagtctcgtgaggatgttgagtcctctgtcagtttcctcgctctc cacgaacaagtccgtatgaacgacagcaatggcgagcttgtcaagcttgcacagctgaag accgagcttggcgaactctcgagccaggatgagaagaagttcaagcagctgaccaaggct gccgagcgtgatattttacacaacgctgacgtcgtctgctgcacctgtgtcggagcaggc gatccccgtctctctaagatcaagttccgtaatgttttgatcgatgagtcgacccagtct gctgagccggaatgtatgattcctcttgttctcggttgcaagcaggtggttcttgttggc gaccacaagcagctgggcccagtcatcatgaacaagaaggcagcgaaggcaggcctcaac cagtctctgttcgagcgactggtgaatttgcgtctgcagcccattcggctgaacactcag taccgcatgcacccatgcctgtcggaattcccatccaacatgttctacgatggttccctt caaaacggcgtgacgcacgcccagcgactccgccgcgatgtcgacttcccatggcccgtt gccgatacacccatgatgttctggtcgaacctgggtaacgaggagatctcagcctccggc acatcttatctcaaccgcaccgaggcttcgaacgtcgagaaggttgtgactcggttcttc aaggcaggcgtcaagccccaggacattggtgttatcacaccgtacgaaggccagcgcagc tacatcgttagcacgatgcagaacacgggcactttcaagaaggaaagctacaaggaggtc gaggtggcgtcggtcgacgccttccagggcagagagaaggatttcatcgtactctcttgc gtgcgttccagcgacaaccaaggcatcggtttcctttcggacccccgtcgcctgaacgtt ggtctcacgcgcgcgaagtacggcctcgtcatcctcggcaaccccaaggtgctgtctaaa cacgagctctggcaccatcttcttgtccactttaaggaccgcaagtgtctcgtcgagggc ccgcttaccaaccctgcaaaagctcccctccctccagtttggcaaaccccaagacgcccg tcccgtcaaaagttcaaccagcctaaccaatacgctgccggcggatacagcagcggcaat gggaacagtaatggcagccgctacggtcctcctggcggttctgtccgcgactttgataca ggctccgttgtgtcctacattcctgacgacgtctcctctattcacagctctagcctcggc ggcgccggcctcaacacgacctaccctcagttcttctccggattcggccacgaaacctgg cccggactgccaggtgcccctactggtcggtccggcaaccgcagggccgcacgcggcacg gagagcatcgctggcgagagtgtggccaattctgagtacaccgatgcaagcgctagtgtc attggggccaagggagtaggtcagggcggcgtcagcctgggcgcgggtcttcaagatgcc attcacggcatgcggccggcatcttacagccgcagcgaccgtctcacgcaatatgtcaac tcgaccagcggtaaccgaaacggccctggcaatggctacgggcgtcgcttcgacaaggat gacgatgaaaagagcgtcagcactgccttccacagtcagattggcggcggcttcgactga

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