Verticillium dahliae: VDAG_03244
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Entry
VDAG_03244 CDS
T03450
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
vda
Verticillium dahliae
Pathway
vda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDAG_03244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vda03041
]
VDAG_03244
Enzymes [BR:
vda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VDAG_03244
Spliceosome [BR:
vda03041
]
Complex C
Other components
Step II factors
VDAG_03244
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
SRP54
ResIII
ATPase
AAA_30
SLFN-g3_helicase
nSTAND3
T2SSE
Flavi_DEAD
AAA_24
ABC_tran
GAD
AAA_16
Spc42p
Motif
Other DBs
NCBI-GeneID:
20704707
NCBI-ProteinID:
XP_009655404
UniProt:
G2WZ02
LinkDB
All DBs
Position
6
AA seq
963 aa
AA seq
DB search
MSEDRSYAPPVFKRRRLDGSGRSTPRAEHASTPGPDVPQPTDEDTKALDRDWYAGDEFGG
HVFGDDMHNPFGHDYSAWEKEHQEAVKAEKMSSRYDARREQRNRDNDAWETNRMLVSGVA
QRRDMAADFDDDEATRVHLLVHELRPPFLDGRTIFTKQLEPVPAVRDYQSDMAVFSRKGS
KVVKEARQQRERQRQAQEATSMKGTALGNLMGVKEEEGDSAMAIAGEEDAVRKPDGETSN
KFSDHMKKKAEGGSDFSRTKTLQEQRQYLPAFAVREDLMRVIRENQVIVVVGETGSGKTT
QLTQFLYEEGYGDSGMIGCTQPRRVAAMSVAKRVAEEMDVKLGSTVGYAIRFEDCTSKET
VIKYMTDGVLLRESLNEPDLDKYSCIIMDEAHERALNTDILMGLFKKILQRRRDLKLIVT
SATMNSKKFSEFYGGAPDFTIPGRTFPVDTMFHRSPVEDYVDQAVQQVLSIHVSMDQGDI
LVFMTGQEDIEVTCELVQKRLDALNDPPKLSILPIYSQMPADLQAKIFDRAAPGVRKCIV
ATNIAETSLTVDGIKYVVDAGYSKMKVYNPKMGMDTLQITPISQANASQRSGRAGRTGPG
KAFRLFTEKAFKEELYLQTIPEIQRTNLSNTVLMLKSLGVKDLLDFDFMDPPPQDTITTS
MFDLWALGALNNLGELTKLGAKMSAFPMDPSLSKLLITAEEYGCSEEMITIVSMLSVPNV
FYRPKERQDEADTQREKFWVHESDHLTYLQVYSAWKSNGMSDGWCIKHFLHPKSLRRAKE
IRDQLLDIMKMQKMQMLSCGMDWDVIRKCICSGYYHQAAKYKGSGEYINLRTNLGVQLHP
TSALYAGHPPDYIVYHELILTSKVYVSTVTAVDPHWLADLGGVFYSVKEKGYSMRDKRIT
ETEFNRKMEIETQMADDRRRQQEQMAAEQERDSRKKTLSGPVKKVVTQGAVKKPVIKRKG
RNF
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagaccgatcctatgccccgccggtcttcaagcggcgaaggctcgacggcagc
ggccgctcgacgccgcgggccgagcacgcctcgacaccgggccccgacgtgccccagccg
acagacgaagacacgaaagcgctggaccgcgactggtacgccggcgacgagtttggcggg
cacgtgttcggcgacgacatgcacaacccgttcggccacgactactcggcctgggagaag
gagcaccaggaggccgtcaaggcggagaagatgtcgagccggtacgacgcgcggcgcgag
cagcgcaacagggacaacgacgcctgggagacgaaccgcatgctcgtgtcgggcgtcgcg
cagcggcgcgacatggcggccgactttgacgacgacgaggcgacgcgcgtgcacctgctc
gtgcacgagctgcgcccgcccttcctcgacggccgcaccatctttaccaagcagctcgag
cccgtgcccgccgtgcgcgactaccagagcgacatggccgtcttcagccgcaagggcagc
aaggtcgtcaaggaggcgcggcagcagcgcgagcgccagcggcaggcgcaggaggcgacg
agcatgaagggcaccgcgctcggcaacctcatgggcgtcaaggaggaggaaggcgacagc
gccatggccattgccggcgaggaggacgccgtcaggaagcccgacggcgagacgagcaac
aagttcagcgaccacatgaagaagaaggccgagggcggcagcgactttagcaggacgaag
acgctgcaggagcagaggcagtacctgcccgcgtttgccgtcagggaggacctgatgcgc
gtcattcgggagaaccaggtcattgtcgtcgtcggcgagacgggctccggcaagacgacg
cagttgacgcagttcctgtatgaggagggctacggagactcgggcatgattgggtgcaca
cagccgaggcgtgtcgccgccatgagcgtcgcgaaacgtgtggcggaagagatggacgtc
aagctcggcagcaccgtcggctatgccattcgttttgaggactgtaccagcaaggagacg
gtcatcaagtacatgaccgatggtgtgcttcttcgagagtcgctcaacgagcctgacctc
gacaagtactcgtgcatcatcatggacgaggcgcacgagcgtgcgttgaacaccgacatt
ctaatgggactcttcaagaagatcttgcaaaggagacgagatttaaaactcatcgtcacg
tctgccaccatgaactcgaaaaagttctccgaattctacggcggcgccccagatttcact
attccgggaaggacgtttccggtcgacaccatgttccatcggtcgccggtggaggactat
gtggaccaggcggtgcagcaggttctgtccatccatgtgtctatggaccaaggcgacatc
ctcgttttcatgaccggtcaagaggacattgaagtgacctgcgagctggtgcagaaacgc
ctggatgcgctgaatgacccaccaaaactcagcatcctccccatttacagtcagatgcct
gcagacctgcaggccaagattttcgaccgagcggcaccgggagtccgcaagtgcatcgta
gcgacgaatattgcggaaactagcttgacagtcgatggtatcaagtacgtcgtagatgcg
ggctattccaagatgaaagtctataaccccaagatgggtatggatacgcttcagatcacc
cccatctcccaggcgaacgcttcacagcgttcaggtcgagctggccgcacagggcccggc
aaggcgttccggctgtttacagaaaaggcctttaaagaagaactttacctacagacgatt
ccggaaatccagcggacgaacctcagcaacacggttctcatgttgaagtcgctcggcgtc
aaggatctcctcgatttcgactttatggaccctccaccgcaagacaccatcaccacctcc
atgttcgacctctgggctctgggcgccctcaacaacctgggcgagctgacgaagctgggc
gccaagatgagcgctttccccatggatccgtcactgtcgaagcttctcattacggccgag
gaatacggctgcagcgaggagatgatcaccatcgtctccatgctgtccgtgcccaacgtg
ttctaccgaccgaaggagcggcaagacgaggccgacacgcagcgcgagaagttctgggtc
cacgagtcggatcatctgacctacctgcaggtgtactcggcgtggaagtccaacggcatg
tcggacggctggtgcatcaagcacttcctgcaccccaagtcgctgcggcgcgccaaggag
atccgcgaccaactgctcgacattatgaagatgcagaagatgcagatgctcagctgcggc
atggactgggacgtcatccgcaagtgcatctgctcgggctactaccaccaggccgccaag
tacaagggctcgggcgagtacatcaacctgcgcaccaacctcggcgtccagctgcacccg
acctcggccctgtacgcgggccacccgcccgactacattgtgtaccacgagctcatcctc
acgtccaaggtgtacgtgtccaccgtcacggccgtggatccgcactggctcgcggacctc
ggcggcgtcttttactcggtcaaggaaaagggctactcgatgcgcgacaagcgcatcacc
gagacggaattcaaccgcaagatggagattgagacgcaaatggccgacgacaggcggcgg
cagcaggagcagatggccgccgagcaggagcgggactcgaggaaaaagacgctcagcgga
ccagtgaagaaggtcgtcacacagggggccgtgaagaagccggtgatcaagcgcaaggga
aggaacttttag
DBGET
integrated database retrieval system
