Verticillium dahliae: VDAG_03923
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Entry
VDAG_03923 CDS
T03450
Name
(RefSeq) suppressor of stem-loop protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
vda
Verticillium dahliae
Pathway
vda03022
Basal transcription factors
vda03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
VDAG_03923
09124 Replication and repair
03420 Nucleotide excision repair
VDAG_03923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vda03021
]
VDAG_03923
03400 DNA repair and recombination proteins [BR:
vda03400
]
VDAG_03923
Transcription machinery [BR:
vda03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
VDAG_03923
DNA repair and recombination proteins [BR:
vda03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
VDAG_03923
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
20705386
NCBI-ProteinID:
XP_009652302
UniProt:
G2X0Z4
LinkDB
All DBs
Position
3
AA seq
461 aa
AA seq
DB search
MSDSDGDFVESEDDRHRPSRPAGGGKEARKKKKAGKAAAWEVVKRSWETVEEGADGSLDV
EGRAEAEKRRRLLRDTTPLQRGIIRHLVLVLDMSFAMAEKDLLPTRLRLTWRLAREFVKE
YFEQNPISQMGIVGMRDGVAVRVSEMGGNPVEHVEAINKWAEIDPQGSPSLQNALEMCRG
ALFHAPSHGTREVLVVYGALLSSDPGDIHDTIANLLADRIRVSIVGLAAQVAICEELCRK
TNAGDATQYNIALDEMHYRELLLRTTTPPVTRTQAQSTASLLMMGFPSRTLAPADTTAYC
ACHNTPVREGYLCTRCGTRVCRLPAECPACGLTLILSTHLARSYHHLFPLRNWVEVPWAR
AAASRACYACLAPFPDPPPQRRGHRTNGTDGGDKEAAPVPKQKGVSESSRYACQVCGNHF
CIDCDVFAHEVIHNCPGCQSDARGAVTNGENGTNGAMDVDS
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtccgactccgacggcgactttgtcgagtccgaagacgaccgccacagaccctcgcgg
ccggcgggcggcggcaaggaggcgcgtaagaagaaaaaggccggcaaggcagcggcatgg
gaggtcgttaagcggtcgtgggagacggtcgaggagggcgccgacggcagcctcgacgtc
gaggggcgggccgaggccgagaagcggcggcggctgctgcgcgatacgacgccgctgcag
cgcggcatcatccggcacctcgtgctcgtgctcgacatgagcttcgccatggccgagaag
gacctgctgcccacgcggctgcggctcacgtggcgcctcgcgcgcgagttcgtcaaggag
tactttgagcagaaccccatctcgcagatgggcatcgtcggcatgcgcgacggcgtcgcc
gtccgcgtcagcgagatgggcggcaaccccgtcgagcatgtcgaggccatcaacaagtgg
gccgagattgacccgcagggcagcccgagtttgcagaatgcgctcgagatgtgtcgtggt
gccctgttccacgcgccgagccacggcacgagagaggtgctcgtcgtctacggcgccctg
ctgtcgagcgaccccggcgacatccacgacacgatcgcgaacctcctcgccgacaggata
cgcgtgtcgatcgtcgggctcgcggcccaggtggccatctgcgaggagctctgccgcaag
accaacgccggcgacgcgacgcagtacaacattgccctcgacgagatgcactaccgcgag
ctgctgctccgcacgacgacgccgcccgtgacgcgcacccaggcccagagcacggcctcg
ctcctcatgatgggcttcccctcgcgcaccctcgcccccgccgacacgacggcctactgc
gcctgccacaacacgcccgtccgggagggctacctctgcacccgctgcggcacccgcgtc
tgccgcctgcccgccgagtgtcccgcctgcggcctgaccctcatcctctccacccacctc
gcccgctcctaccaccacctcttcccgctgcgcaactgggtcgaggtcccctgggcccgc
gccgccgcctcgcgcgcctgctacgcgtgcctcgcgccgtttcccgacccgccgccccag
cgccgcggccacaggaccaacggcaccgacggcggcgacaaggaggcggcgccggtgccg
aagcaaaagggcgtcagcgagagcagtcgctacgcgtgtcaggtgtgcggcaaccacttc
tgcatagactgcgacgtctttgcgcacgaggtcatacacaactgccccggctgtcagagc
gacgcgcggggcgctgtcacgaacggggagaacgggacgaacggggcgatggacgtggac
agctag
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